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F0SBK0 (F0SBK0_PEDSD) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
D-alanine--D-alanine ligase HAMAP-Rule MF_00047
EC=6.3.2.4 HAMAP-Rule MF_00047
Alternative name(s):
D-Ala-D-Ala ligase HAMAP-Rule MF_00047
D-alanylalanine synthetase HAMAP-Rule MF_00047
Gene names
Name:ddl HAMAP-Rule MF_00047
Ordered Locus Names:Pedsa_1076 EMBL ADY51646.1
OrganismPedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) [Complete proteome] [HAMAP] EMBL ADY51646.1
Taxonomic identifier762903 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Sphingobacteriia › Sphingobacteriales › Sphingobacteriaceae › Pedobacter ›

Protein attributes

Sequence length330 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation By similarity. HAMAP-Rule MF_00047 SAAS SAAS005905

Catalytic activity

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine. HAMAP-Rule MF_00047 SAAS SAAS005905

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity. HAMAP-Rule MF_00047 SAAS SAAS005905

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. HAMAP-Rule MF_00047 SAAS SAAS005905

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00047 SAAS SAAS005905.

Sequence similarities

Belongs to the D-alanine--D-alanine ligase family. HAMAP-Rule MF_00047

Contains 1 ATP-grasp domain. HAMAP-Rule MF_00047 SAAS SAAS005905

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain122 – 323202ATP-grasp By similarity HAMAP-Rule MF_00047
Nucleotide binding150 – 20556ATP By similarity HAMAP-Rule MF_00047

Sites

Metal binding2771Magnesium or manganese 1 By similarity HAMAP-Rule MF_00047
Metal binding2901Magnesium or manganese 1 By similarity HAMAP-Rule MF_00047
Metal binding2901Magnesium or manganese 2 By similarity HAMAP-Rule MF_00047
Metal binding2921Magnesium or manganese 2 By similarity HAMAP-Rule MF_00047

Sequences

Sequence LengthMass (Da)Tools
F0SBK0 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: 55A228908B1ABDE5

FASTA33036,865
        10         20         30         40         50         60 
MKKNIALVAG GFTGESVISL NSTKTVYKNL DRSKYNVYQI IIDSEKWYHE DEQGESHLID 

        70         80         90        100        110        120 
KNDFSINIKG TKVTFDCAFI IIHGIPGEDG KLQGYFDMLN IPYTSCDATT SAITMNKGYT 

       130        140        150        160        170        180 
KQIVSAVPDL NIAKSVQLFS LDSYKQAEIE QNLGLPLFVK PNNGGSSIGM SKVNEWDDLD 

       190        200        210        220        230        240 
KAVQRAFAEG SEVLIEEFIS GREFTVGAYT VDGEVNVLPI TEIITTKEFF DFEAKYTAGL 

       250        260        270        280        290        300 
TNEVTPAELD NELVERIGEI IKRTYIQLNC KGMVRIDFIL KDNKDFYFIE VNTIPGQSEN 

       310        320        330 
SIIPQQVRAA GLTLTYFYGN LIDEALKTAK

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002545 Genomic DNA. Translation: ADY51646.1.
RefSeqYP_004273468.1. NC_015177.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADY51646; ADY51646; Pedsa_1076.
GeneID10230629.
KEGGpsn:Pedsa_1076.
PATRIC47002834. VBIPedSal163994_1119.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01921.
OMADYIIEAD.

Enzyme and pathway databases

BioCycPSAL762903:GHB2-1099-MONOMER.
UniPathwayUPA00219.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 2 hits.
3.40.50.20. 1 hit.
HAMAPMF_00047. Dala_Dala_lig.
InterProIPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom.
[Graphical view]
PANTHERPTHR23132. PTHR23132. 1 hit.
PfamPF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
[Graphical view]
SUPFAMSSF52440. PreATP-grasp-like. 1 hit.
TIGRFAMsTIGR01205. D_ala_D_alaTIGR. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
PS00843. DALA_DALA_LIGASE_1. 1 hit.
PS00844. DALA_DALA_LIGASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF0SBK0_PEDSD
AccessionPrimary (citable) accession number: F0SBK0
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: May 1, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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