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Protein

2-dehydro-3-deoxyphosphooctonate aldolase

Gene

Pedsa_1025

Organism
Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 3-deoxy-D-manno-octulosonate 8-phosphate + phosphate.SAAS annotation

Pathwayi: lipopolysaccharide biosynthesis

This protein is involved in the pathway lipopolysaccharide biosynthesis, which is part of Bacterial outer membrane biogenesis.SAAS annotation
View all proteins of this organism that are known to be involved in the pathway lipopolysaccharide biosynthesis and in Bacterial outer membrane biogenesis.

Pathwayi: 3-deoxy-D-manno-octulosonate biosynthesis

This protein is involved in step 2 of the subpathway that synthesizes 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate.SAAS annotation
Proteins known to be involved in the 3 steps of the subpathway in this organism are:
  1. no protein annotated in this organism
  2. 2-dehydro-3-deoxyphosphooctonate aldolase (Pedsa_1025)
  3. no protein annotated in this organism
This subpathway is part of the pathway 3-deoxy-D-manno-octulosonate biosynthesis, which is itself part of Carbohydrate biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate, the pathway 3-deoxy-D-manno-octulosonate biosynthesis and in Carbohydrate biosynthesis.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

TransferaseSAAS annotationImported

Keywords - Biological processi

Lipopolysaccharide biosynthesisSAAS annotation

Enzyme and pathway databases

BioCyciPSAL762903:GHB2-1031-MONOMER.
UniPathwayiUPA00030.
UPA00357; UER00474.

Names & Taxonomyi

Protein namesi
Recommended name:
2-dehydro-3-deoxyphosphooctonate aldolaseSAAS annotation (EC:2.5.1.55SAAS annotation)
Gene namesi
Ordered Locus Names:Pedsa_1025Imported
OrganismiPseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans)Imported
Taxonomic identifieri762903 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesSphingobacteriiaSphingobacterialesSphingobacteriaceaePseudopedobacter
Proteomesi
  • UP000000310 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi762903.Pedsa_1025.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 262DAHP_synth_1InterPro annotationAdd BLAST252

Sequence similaritiesi

Belongs to the KdsA family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CXR. Bacteria.
COG2877. LUCA.
KOiK01627.
OMAiFRGIPTM.
OrthoDBiPOG091H00ND.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
PANTHERiPTHR21057:SF2. PTHR21057:SF2. 1 hit.
PfamiPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01362. KDO8P_synth. 1 hit.

Sequencei

Sequence statusi: Complete.

F0SB01-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLDKLKNQD ANNFFLMAGP CAIEGEEIAL RIAEKIVKIT DKLQIPYIFK
60 70 80 90 100
GSFKKANRSR IDSFTGIGDE KALKILEKVG KEFDVPTVTD IHESSDAAMA
110 120 130 140 150
AAYVDVLQIP AFLCRQTDLL IAAAETGKFV NIKKGQFLSA GSMKFAVDKI
160 170 180 190 200
KDSGNNNVIL TDRGNTFGYQ DLIVDFRGIP EMREFNVPVV MDCTHSLQQP
210 220 230 240 250
NQTSGVTGGK PALIETIAKA AIAVGTDGLF IETHPDPKNA KSDGANMLHL
260
DLLEDLLTKL VKIRRAII
Length:268
Mass (Da):29,310
Last modified:May 3, 2011 - v1
Checksum:iEB54D68385950355
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002545 Genomic DNA. Translation: ADY51596.1.
RefSeqiWP_013632095.1. NC_015177.1.

Genome annotation databases

EnsemblBacteriaiADY51596; ADY51596; Pedsa_1025.
KEGGipsn:Pedsa_1025.
PATRICi47002720. VBIPedSal163994_1062.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002545 Genomic DNA. Translation: ADY51596.1.
RefSeqiWP_013632095.1. NC_015177.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi762903.Pedsa_1025.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADY51596; ADY51596; Pedsa_1025.
KEGGipsn:Pedsa_1025.
PATRICi47002720. VBIPedSal163994_1062.

Phylogenomic databases

eggNOGiENOG4105CXR. Bacteria.
COG2877. LUCA.
KOiK01627.
OMAiFRGIPTM.
OrthoDBiPOG091H00ND.

Enzyme and pathway databases

UniPathwayiUPA00030.
UPA00357; UER00474.
BioCyciPSAL762903:GHB2-1031-MONOMER.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
PANTHERiPTHR21057:SF2. PTHR21057:SF2. 1 hit.
PfamiPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01362. KDO8P_synth. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiF0SB01_PSESL
AccessioniPrimary (citable) accession number: F0SB01
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: November 2, 2016
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.