F0RVD4 (F0RVD4_SPHGB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Exodeoxyribonuclease 7 small subunit HAMAP-Rule MF_00337
EC=3.1.11.6 HAMAP-Rule MF_00337

Alternative name(s):
Exodeoxyribonuclease VII small subunit HAMAP-Rule MF_00337

Gene names

Name:	xseB HAMAP-Rule MF_00337
Ordered Locus Names:	SpiBuddy_1101

Organism

Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) (Spirochaeta sp. (strain Buddy)) [Complete proteome] [HAMAP] EMBL ADY12926.1

Taxonomic identifier

158189 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Spirochaetes › Spirochaetia › Spirochaetales › Spirochaetaceae › Sphaerochaeta › Sphaerochaeta globus

Protein attributes

Sequence length	69 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides By similarity. HAMAP-Rule MF_00337 SAAS SAAS003761
Catalytic activity	Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates. HAMAP-Rule MF_00337 Exonucleolytic cleavage in either 5'- to 3'-or 3'- to 5'-direction to yield nucleoside 5'-phosphates. SAAS SAAS003761
Subunit structure	Heterooligomer composed of large and small subunits By similarity. HAMAP-Rule MF_00337 SAAS SAAS003761
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00337 SAAS SAAS003761.
Sequence similarities	Belongs to the XseB family. HAMAP-Rule MF_00337

Ontologies

Keywords
Cellular component	Cytoplasm HAMAP-Rule MF_00337 SAAS SAAS003761
Molecular function	Exonuclease HAMAP-Rule MF_00337 SAAS SAAS003761 Hydrolase Nuclease
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA catabolic process Inferred from electronic annotation. Source: HAMAP nucleic acid phosphodiester bond hydrolysis Inferred from electronic annotation. Source: GOC
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell exodeoxyribonuclease VII complex Inferred from electronic annotation. Source: InterPro
Molecular_function	exodeoxyribonuclease VII activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F0RVD4 [UniParc]. Last modified May 3, 2011. Version 1. Checksum: A220B5B3394FBEA2	FASTA	69	7,567
	10 20 30 40 50 60 MSFETDISRI EEIAQKLNAS DTSLEESIAL FEEGMRLAKA LEKALAEAKR SVEIVLGENP QEAEITSLA

References

[1]

"Complete sequence of Spirochaeta sp. Buddy." Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Zeytun A., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Ritalahti K.M., Loeffler F.E., Woyke T. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1886 / DSM 22777 / Buddy.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002541 Genomic DNA. Translation: ADY12926.1.
RefSeq	YP_004247120.1. NC_015152.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADY12926; ADY12926; SpiBuddy_1101.
GeneID	10291164.
KEGG	sbu:SpiBuddy_1101.
PATRIC	47021547. VBISpiSp132844_1134.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K03602.
Enzyme and pathway databases
BioCyc	SGLO158189:GHAO-1117-MONOMER.
Family and domain databases
Gene3D	1.10.287.1040. 1 hit.
HAMAP	MF_00337. Exonuc_7_S.
InterPro	IPR003761. Exonuc_VII_S. [Graphical view]
Pfam	PF02609. Exonuc_VII_S. 1 hit. [Graphical view]
PIRSF	PIRSF006488. Exonuc_VII_S. 1 hit.
ProDom	PD028235. Exonuc_VII_S. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF116842. SSF116842. 1 hit.
TIGRFAMs	TIGR01280. xseB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

F0RVD4_SPHGB

Accession

Primary (citable) accession number: F0RVD4

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	May 3, 2011
Last modified:	May 1, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)