Elongation factor Tu - Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703)

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F0RJL0 (F0RJL0_DEIPM) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 16. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Recommended name:
Elongation factor Tu HAMAP-Rule MF_00118
Short name=EF-Tu HAMAP-Rule MF_00118

Gene names

Name:	tuf HAMAP-Rule MF_00118
Ordered Locus Names:	Deipr_0392 EMBL ADY25562.1, Deipr_1438 EMBL ADY26580.1

Organism

Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703) [Complete proteome] [HAMAP] EMBL ADY26580.1

Taxonomic identifier

693977 [NCBI]

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Deinococcales › Deinococcaceae › Deinococcus ›

Protein attributes

Sequence length	405 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118
Subunit structure	Monomer By similarity. HAMAP-Rule MF_00118
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00118.
Sequence similarities	Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Ontologies

Keywords
Biological process	Protein biosynthesis
Cellular component	Cytoplasm HAMAP-Rule MF_00118
Ligand	GTP-binding RuleBase RU000323 HAMAP-Rule MF_00118 Nucleotide-binding
Molecular function	Elongation factor RuleBase RU000325 HAMAP-Rule MF_00118 EMBL ADY26580.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	GTP catabolic process Inferred from electronic annotation. Source: GOC
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	GTP binding Inferred from electronic annotation. Source: HAMAP GTPase activity Inferred from electronic annotation. Source: InterPro translation elongation factor activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Nucleotide binding

19 – 26

GTP By similarity HAMAP-Rule MF_00118

Nucleotide binding

82 – 86

GTP By similarity HAMAP-Rule MF_00118

Nucleotide binding

137 – 140

GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence

Length

Mass (Da)

Tools

F0RJL0 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: 465887B7121B638A
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FASTA

405

44,304

        10         20         30         40         50         60 
MAKGTFERTK PHVNVGTIGH VDHGKTTLTA AITFTAAAMD DTVETLAYDQ IDKAPEEKAR 

        70         80         90        100        110        120 
GITINTSHVE YNTEGRHYSH VDCPGHADYV KNMITGAAQM DGAILVVSSA DGPMPQTREH 

       130        140        150        160        170        180 
ILLARQVGVP YIVVFMNKVD MVDDEELLEL VEMEVRELLS NYEFPGDDLP IVKGSALKAL 

       190        200        210        220        230        240 
EALQANPKTA RGQDEWVDRI WELLDAIDSY IPTPERDTDK AFLMPVEDVF TITGRGTVAT 

       250        260        270        280        290        300 
GRVERGIVKV GDEVEIVGLT DTKKTTVTGV EMHRKLLDSG MAGDNVGVLL RGVSRDDVER 

       310        320        330        340        350        360 
GQVLAKPGSI TPHTQFEASV YVLSKDEGGR HSAFFGGYRP QFYFRTTDVT GVVELKEGVE 

       370        380        390        400 
MVMPGDNVEF TVELIKPIAM EEGLRFAIRE GGRTVGAGVV TKVIK

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete sequence of chromosome of Deinococcus proteolyticus DSM 20540." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Ovchinnikova G., Zeytun A., Detter J.C., Han C., Land M., Hauser L., Markowitz V., Cheng J.-F. Eisen J.A. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703.
[2]	"Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T))." Copeland A., Zeytun A., Yassawong M., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J.F., Han C., Tapia R., Goodwin L.A., Pitluck S., Mavromatis K., Liolios K., Pagani I., Ivanova N., Mikhailova N., Pati A. Lapidus A. Stand. Genomic Sci. 6:240-250(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: MRP EMBL ADY26580.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002536 Genomic DNA. Translation: ADY25562.1. CP002536 Genomic DNA. Translation: ADY26580.1.
RefSeq	YP_004255179.1. NC_015161.1. YP_004256197.1. NC_015161.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADY25562; ADY25562; Deipr_0392. ADY26580; ADY26580; Deipr_1438.
GeneID	10255859. 10256925.
KEGG	dpt:Deipr_0392. dpt:Deipr_1438.
PATRIC	46928542. VBIDeiPro159979_0387.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K02358.
Enzyme and pathway databases
BioCyc	DPRO693977:GCFA-1474-MONOMER. DPRO693977:GCFA-409-MONOMER.
Family and domain databases
HAMAP	MF_00118_B. EF_Tu_B.
InterPro	IPR000795. EF_GTP-bd_dom. IPR027417. P-loop_NTPase. IPR005225. Small_GTP-bd_dom. IPR009001. Transl_elong_EF1A/Init_IF2_C. IPR004161. Transl_elong_EFTu/EF1A_2. IPR004541. Transl_elong_EFTu/EF1A_bac/org. IPR004160. Transl_elong_EFTu/EF1A_C. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Pfam	PF00009. GTP_EFTU. 1 hit. PF03144. GTP_EFTU_D2. 1 hit. PF03143. GTP_EFTU_D3. 1 hit. [Graphical view]
PRINTS	PR00315. ELONGATNFCT.
SUPFAM	SSF50465. Elong_init_C. 1 hit. SSF52540. SSF52540. 1 hit. SSF50447. Translat_factor. 1 hit.
TIGRFAMs	TIGR00485. EF-Tu. 1 hit. TIGR00231. small_GTP. 1 hit.
PROSITE	PS00301. EFACTOR_GTP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F0RJL0_DEIPM

Accession

Primary (citable) accession number: F0RJL0

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	May 3, 2011
Last modified:	May 29, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Regions

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Entry information