SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

F0RAI5

- F0RAI5_CELLC

UniProt

F0RAI5 - F0RAI5_CELLC

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene
Celly_2731
Organism
Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotations

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotations

Enzyme and pathway databases

BioCyciCLYT867900:GHJM-2784-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Celly_2731Imported
OrganismiCellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20)Imported
Taxonomic identifieri867900 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeCellulophaga
ProteomesiUP000007487: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK03088.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

F0RAI5-1 [UniParc]FASTAAdd to Basket

« Hide

MDLQIEDSVL VKKYINGDEK SLEVLINRHN QRISSFIYSK VLDRDITEDI    50
FQDTFIKVIK TLKKGSYSEE GKFLPWVMRI AHNLIIDHFR KNKRMPMFEG 100
SDDFNIFSVI SDDKLNAEKQ LIKNQIDSDL KVLIEELPED QKEVLLMRIY 150
KDMSFKEISE NTGVSINTAL GRMRYALINM RKIIEKHNIV LTN 193
Length:193
Mass (Da):22,685
Last modified:May 3, 2011 - v1
Checksum:i1E508282C2AA1892
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002534 Genomic DNA. Translation: ADY30548.1.
RefSeqiYP_004263419.1. NC_015167.1.

Genome annotation databases

EnsemblBacteriaiADY30548; ADY30548; Celly_2731.
GeneIDi10264767.
KEGGicly:Celly_2731.
PATRICi46919798. VBICelLyt164863_2734.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002534 Genomic DNA. Translation: ADY30548.1 .
RefSeqi YP_004263419.1. NC_015167.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADY30548 ; ADY30548 ; Celly_2731 .
GeneIDi 10264767.
KEGGi cly:Celly_2731.
PATRICi 46919798. VBICelLyt164863_2734.

Phylogenomic databases

KOi K03088.

Enzyme and pathway databases

BioCyci CLYT867900:GHJM-2784-MONOMER.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view ]
SUPFAMi SSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20.

Entry informationi

Entry nameiF0RAI5_CELLC
AccessioniPrimary (citable) accession number: F0RAI5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: February 19, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi