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F0RAI5

- F0RAI5_CELLC

UniProt

F0RAI5 - F0RAI5_CELLC

Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Celly_2731

Organism
Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (03 May 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro
    3. sigma factor activity Source: UniProtKB-KW

    GO - Biological processi

    1. DNA-templated transcription, initiation Source: InterPro

    Keywords - Molecular functioni

    Sigma factorSAAS annotation

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-bindingSAAS annotation

    Enzyme and pathway databases

    BioCyciCLYT867900:GHJM-2784-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA polymerase, sigma-24 subunit, ECF subfamilyImported
    Gene namesi
    Ordered Locus Names:Celly_2731Imported
    OrganismiCellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20)Imported
    Taxonomic identifieri867900 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeCellulophaga
    ProteomesiUP000007487: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK03088.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR014284. RNA_pol_sigma-70_dom.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    F0RAI5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDLQIEDSVL VKKYINGDEK SLEVLINRHN QRISSFIYSK VLDRDITEDI    50
    FQDTFIKVIK TLKKGSYSEE GKFLPWVMRI AHNLIIDHFR KNKRMPMFEG 100
    SDDFNIFSVI SDDKLNAEKQ LIKNQIDSDL KVLIEELPED QKEVLLMRIY 150
    KDMSFKEISE NTGVSINTAL GRMRYALINM RKIIEKHNIV LTN 193
    Length:193
    Mass (Da):22,685
    Last modified:May 3, 2011 - v1
    Checksum:i1E508282C2AA1892
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002534 Genomic DNA. Translation: ADY30548.1.
    RefSeqiYP_004263419.1. NC_015167.1.

    Genome annotation databases

    EnsemblBacteriaiADY30548; ADY30548; Celly_2731.
    GeneIDi10264767.
    KEGGicly:Celly_2731.
    PATRICi46919798. VBICelLyt164863_2734.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002534 Genomic DNA. Translation: ADY30548.1 .
    RefSeqi YP_004263419.1. NC_015167.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADY30548 ; ADY30548 ; Celly_2731 .
    GeneIDi 10264767.
    KEGGi cly:Celly_2731.
    PATRICi 46919798. VBICelLyt164863_2734.

    Phylogenomic databases

    KOi K03088.

    Enzyme and pathway databases

    BioCyci CLYT867900:GHJM-2784-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR014284. RNA_pol_sigma-70_dom.
    IPR007627. RNA_pol_sigma70_r2.
    IPR013249. RNA_pol_sigma70_r4_t2.
    IPR013325. RNA_pol_sigma_r2.
    IPR013324. RNA_pol_sigma_r3_r4.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF04542. Sigma70_r2. 1 hit.
    PF08281. Sigma70_r4_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF88659. SSF88659. 1 hit.
    SSF88946. SSF88946. 1 hit.
    TIGRFAMsi TIGR02937. sigma70-ECF. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20Imported.

    Entry informationi

    Entry nameiF0RAI5_CELLC
    AccessioniPrimary (citable) accession number: F0RAI5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: May 3, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3