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Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Celly_2731

Organism
Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorSAAS annotation

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciCLYT867900:GHJM-2784-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Celly_2731Imported
OrganismiCellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20)Imported
Taxonomic identifieri867900 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeCellulophaga
Proteomesi
  • UP000007487 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi867900.Celly_2731.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 9470Sigma70_r2InterPro annotationAdd
BLAST
Domaini132 – 16837Sigma70_r4_2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105NK8. Bacteria.
ENOG410XT41. LUCA.
KOiK03088.
OMAiEVLIMRH.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.

Sequencei

Sequence statusi: Complete.

F0RAI5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLQIEDSVL VKKYINGDEK SLEVLINRHN QRISSFIYSK VLDRDITEDI
60 70 80 90 100
FQDTFIKVIK TLKKGSYSEE GKFLPWVMRI AHNLIIDHFR KNKRMPMFEG
110 120 130 140 150
SDDFNIFSVI SDDKLNAEKQ LIKNQIDSDL KVLIEELPED QKEVLLMRIY
160 170 180 190
KDMSFKEISE NTGVSINTAL GRMRYALINM RKIIEKHNIV LTN
Length:193
Mass (Da):22,685
Last modified:May 3, 2011 - v1
Checksum:i1E508282C2AA1892
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002534 Genomic DNA. Translation: ADY30548.1.
RefSeqiWP_013622291.1. NC_015167.1.

Genome annotation databases

EnsemblBacteriaiADY30548; ADY30548; Celly_2731.
KEGGicly:Celly_2731.
PATRICi46919798. VBICelLyt164863_2734.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002534 Genomic DNA. Translation: ADY30548.1.
RefSeqiWP_013622291.1. NC_015167.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi867900.Celly_2731.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADY30548; ADY30548; Celly_2731.
KEGGicly:Celly_2731.
PATRICi46919798. VBICelLyt164863_2734.

Phylogenomic databases

eggNOGiENOG4105NK8. Bacteria.
ENOG410XT41. LUCA.
KOiK03088.
OMAiEVLIMRH.

Enzyme and pathway databases

BioCyciCLYT867900:GHJM-2784-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR007627. RNA_pol_sigma70_r2.
IPR013249. RNA_pol_sigma70_r4_t2.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF08281. Sigma70_r4_2. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02937. sigma70-ECF. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20Imported.

Entry informationi

Entry nameiF0RAI5_CELLC
AccessioniPrimary (citable) accession number: F0RAI5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: May 11, 2016
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.