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Protein
Submitted name:

RNA polymerase, sigma-24 subunit, ECF subfamily

Gene

Celly_2731

Organism
Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamilyImported
Gene namesi
Ordered Locus Names:Celly_2731Imported
OrganismiCellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20)Imported
Taxonomic identifieri867900 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeCellulophaga
Proteomesi
  • UP000007487 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi867900.Celly_2731

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini25 – 94Sigma70_r2InterPro annotationAdd BLAST70
Domaini132 – 168Sigma70_r4_2InterPro annotationAdd BLAST37

Sequence similaritiesi

Belongs to the sigma-70 factor family. ECF subfamily.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105NK8 Bacteria
ENOG410XT41 LUCA
KOiK03088
OMAiVLIMRHY
OrthoDBiPOG091H04ZH

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR007627 RNA_pol_sigma70_r2
IPR013249 RNA_pol_sigma70_r4_t2
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF08281 Sigma70_r4_2, 1 hit
SUPFAMiSSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02937 sigma70-ECF, 1 hit

Sequencei

Sequence statusi: Complete.

F0RAI5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLQIEDSVL VKKYINGDEK SLEVLINRHN QRISSFIYSK VLDRDITEDI
60 70 80 90 100
FQDTFIKVIK TLKKGSYSEE GKFLPWVMRI AHNLIIDHFR KNKRMPMFEG
110 120 130 140 150
SDDFNIFSVI SDDKLNAEKQ LIKNQIDSDL KVLIEELPED QKEVLLMRIY
160 170 180 190
KDMSFKEISE NTGVSINTAL GRMRYALINM RKIIEKHNIV LTN
Length:193
Mass (Da):22,685
Last modified:May 3, 2011 - v1
Checksum:i1E508282C2AA1892
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002534 Genomic DNA Translation: ADY30548.1
RefSeqiWP_013622291.1, NC_015167.1

Genome annotation databases

EnsemblBacteriaiADY30548; ADY30548; Celly_2731
KEGGicly:Celly_2731

Similar proteinsi

Entry informationi

Entry nameiF0RAI5_CELLC
AccessioniPrimary (citable) accession number: F0RAI5
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 25, 2018
This is version 43 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health