F0RAI5 (F0RAI5_CELLC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RNA polymerase, sigma-24 subunit, ECF subfamily EMBL ADY30548.1

Gene names

Ordered Locus Names:

Celly_2731

Organism

Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) [Complete proteome] [HAMAP] EMBL ADY30548.1

Taxonomic identifier

867900 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Cellulophaga › Cellulophaga lytica

Protein attributes

Sequence length	193 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS007627
Molecular function	Sigma factor SAAS SAAS007627
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F0RAI5 [UniParc]. Last modified May 3, 2011. Version 1. Checksum: 1E508282C2AA1892	FASTA	193	22,685
	10 20 30 40 50 60 MDLQIEDSVL VKKYINGDEK SLEVLINRHN QRISSFIYSK VLDRDITEDI FQDTFIKVIK 70 80 90 100 110 120 TLKKGSYSEE GKFLPWVMRI AHNLIIDHFR KNKRMPMFEG SDDFNIFSVI SDDKLNAEKQ 130 140 150 160 170 180 LIKNQIDSDL KVLIEELPED QKEVLLMRIY KDMSFKEISE NTGVSINTAL GRMRYALINM 190 RKIIEKHNIV LTN

References

[1]

"Complete genome sequence of Cellulophaga lytica type strain (LIM-21)." Pati A., Abt B., Teshima H., Lu M., Misra M., Nolan M., Lapidus A., Lucas S., Hammon N., Deshpande S., Cheng J., Tapia R., Han C., Goodwin L., Pitluck S., Liolios K., Pagani I., Mavromatis K. , Ovchinikova G., Chen A., Palaniappan K., Land M., Hauser L., Jeffries C., Detter J., Brambilla E., Kannan P., Rohde M., Spring S., Goker M., Woyke T., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H., Ivanova N. Stand. Genomic Sci. 4:221-232(2011) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002534 Genomic DNA. Translation: ADY30548.1.
RefSeq	YP_004263419.1. NC_015167.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADY30548; ADY30548; Celly_2731.
GeneID	10264767.
KEGG	cly:Celly_2731.
PATRIC	46919798. VBICelLyt164863_2734.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K03088.
Enzyme and pathway databases
BioCyc	CLYT867900:GHJM-2783-MONOMER.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR007627. RNA_pol_sigma70_r2. IPR013249. RNA_pol_sigma70_r4_t2. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF08281. Sigma70_r4_2. 1 hit. [Graphical view]
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 1 hit.
TIGRFAMs	TIGR02937. sigma70-ECF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

F0RAI5_CELLC

Accession

Primary (citable) accession number: F0RAI5

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	May 3, 2011
Last modified:	May 1, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)