F0Q2F4 (F0Q2F4_ACIAP) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ADX46602.1

Gene names

Ordered Locus Names:

Acav_2693

Organism

Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) [Complete proteome] [HAMAP] EMBL ADX46602.1

Taxonomic identifier

643561 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Acidovorax › Acidovorax avenae › Acidovorax avenae subsp. avenae

Protein attributes

Sequence length	936 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADX46602.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F0Q2F4 [UniParc]. Last modified May 3, 2011. Version 1. Checksum: 752016B2986834B5	FASTA	936	101,763
	10 20 30 40 50 60 MARRSTASGT AQGAPQKAPQ KAAPDALADY ARKRDFRSTP EPGAEPGDAL PRGALRFVVQ 70 80 90 100 110 120 KHWASRLHYD FRLEIDGTMK SWAVPKGPSF DPRDKRMAVQ VEDHPVAYNR FEGQIPARQY 130 140 150 160 170 180 GAGRVIIWDK GYWVPLEDPA RAWRAGKLKF ELHGHKLQGR WTLVRMHGRG NERQPPWLLI 190 200 210 220 230 240 KERDGLERDA VEYSVVDAMP DSVKSLPDLP VPPPAHGRQA RGPAPSGTRR TPARGKAPAS 250 260 270 280 290 300 AQSLETTSGR TIRAGTSRRP KKAPLPAALA PQLATLVDGP PTGLAEWMFE LKFDGYRILA 310 320 330 340 350 360 RIEGSEVRLI TRNGNDWTHR MPGLARAVRA LPVESGWIDG EIVVPDRNGI PDFQALQNAF 370 380 390 400 410 420 ESGRRPGSSA AGTPDGGAVD RSGLVFYVFD LPFLNGHDLR GLPLAERREA LRTLVAEAGS 430 440 450 460 470 480 DTVRFSDAFE ASPGELIASA CRLGFEGVIG KRVSSAYMSG RSADWIKLKC GQRQEFVIGG 490 500 510 520 530 540 YTDPQGTRTG LGSLLLGVHG DDGQLHYAGN VGSGFSERTL ATLHAQLRSL ATDRSPFAEG 550 560 570 580 590 600 TQVGRKAHWV KPQLLAEVAF AGWTQTRHVR QAVFRGLRED KPPREIVRET PAPAAAVAGT 610 620 630 640 650 660 PSTPPAAPRR ASSDATPSRA RSTMTSRRTA SAPSPAAPTS SLRVTHGDRV IDAASGTTKL 670 680 690 700 710 720 ELVRYYALVA PLMMEHLLQR PVSVVRAPEG VGGELFFQKH PEHGSVDGVR TLDPALDPGH 730 740 750 760 770 780 PPLAEIAGPE GLPAWAQMNT IEFHSWNARS DRIDRPDRIA FDLDPGEGVP WDKVQEAATL 790 800 810 820 830 840 MRVMLTELGL PGFLKTSGGK GLHVVVPIKR LHGWDAVKGF SQAVVQHMAR TIPQLFVAKS 850 860 870 880 890 900 GPRNRVGKIF VDYLRNGFGA TTVSAWSARA RPGLGISVPL RWDELGALSS STEWTVATVE 910 920 930 ERLREGNASW EGYDKAAVSI TQAMKMLGYE APRGGR

References

[1]

"Complete sequence of Acidovorax avenae subsp. avenae ATCC 19860." Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Chertkov O., Held B., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Gordon S., Woyke T. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002521 Genomic DNA. Translation: ADX46602.1.
RefSeq	YP_004235169.1. NC_015138.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADX46602; ADX46602; Acav_2693.
GeneID	10307632.
KEGG	aaa:Acav_2693.
PATRIC	46840219. VBIAciAve68977_2753.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
OMA	LVAECEF.
Enzyme and pathway databases
BioCyc	AAVE643561:GHRD-2731-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F0Q2F4_ACIAP

Accession

Primary (citable) accession number: F0Q2F4

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	May 3, 2011
Last modified:	May 1, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)