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F0Q2F4 (F0Q2F4_ACIAP) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length936 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADX46602.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F0Q2F4 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: 752016B2986834B5

FASTA936101,763
        10         20         30         40         50         60 
MARRSTASGT AQGAPQKAPQ KAAPDALADY ARKRDFRSTP EPGAEPGDAL PRGALRFVVQ 

        70         80         90        100        110        120 
KHWASRLHYD FRLEIDGTMK SWAVPKGPSF DPRDKRMAVQ VEDHPVAYNR FEGQIPARQY 

       130        140        150        160        170        180 
GAGRVIIWDK GYWVPLEDPA RAWRAGKLKF ELHGHKLQGR WTLVRMHGRG NERQPPWLLI 

       190        200        210        220        230        240 
KERDGLERDA VEYSVVDAMP DSVKSLPDLP VPPPAHGRQA RGPAPSGTRR TPARGKAPAS 

       250        260        270        280        290        300 
AQSLETTSGR TIRAGTSRRP KKAPLPAALA PQLATLVDGP PTGLAEWMFE LKFDGYRILA 

       310        320        330        340        350        360 
RIEGSEVRLI TRNGNDWTHR MPGLARAVRA LPVESGWIDG EIVVPDRNGI PDFQALQNAF 

       370        380        390        400        410        420 
ESGRRPGSSA AGTPDGGAVD RSGLVFYVFD LPFLNGHDLR GLPLAERREA LRTLVAEAGS 

       430        440        450        460        470        480 
DTVRFSDAFE ASPGELIASA CRLGFEGVIG KRVSSAYMSG RSADWIKLKC GQRQEFVIGG 

       490        500        510        520        530        540 
YTDPQGTRTG LGSLLLGVHG DDGQLHYAGN VGSGFSERTL ATLHAQLRSL ATDRSPFAEG 

       550        560        570        580        590        600 
TQVGRKAHWV KPQLLAEVAF AGWTQTRHVR QAVFRGLRED KPPREIVRET PAPAAAVAGT 

       610        620        630        640        650        660 
PSTPPAAPRR ASSDATPSRA RSTMTSRRTA SAPSPAAPTS SLRVTHGDRV IDAASGTTKL 

       670        680        690        700        710        720 
ELVRYYALVA PLMMEHLLQR PVSVVRAPEG VGGELFFQKH PEHGSVDGVR TLDPALDPGH 

       730        740        750        760        770        780 
PPLAEIAGPE GLPAWAQMNT IEFHSWNARS DRIDRPDRIA FDLDPGEGVP WDKVQEAATL 

       790        800        810        820        830        840 
MRVMLTELGL PGFLKTSGGK GLHVVVPIKR LHGWDAVKGF SQAVVQHMAR TIPQLFVAKS 

       850        860        870        880        890        900 
GPRNRVGKIF VDYLRNGFGA TTVSAWSARA RPGLGISVPL RWDELGALSS STEWTVATVE 

       910        920        930 
ERLREGNASW EGYDKAAVSI TQAMKMLGYE APRGGR 

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References

[1]"Complete sequence of Acidovorax avenae subsp. avenae ATCC 19860."
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Chertkov O., Held B., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Gordon S., Woyke T.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002521 Genomic DNA. Translation: ADX46602.1.
RefSeqYP_004235169.1. NC_015138.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADX46602; ADX46602; Acav_2693.
GeneID10307632.
KEGGaaa:Acav_2693.
PATRIC46840219. VBIAciAve68977_2753.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAHPLDYAD.

Enzyme and pathway databases

BioCycAAVE643561:GHRD-2731-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF0Q2F4_ACIAP
AccessionPrimary (citable) accession number: F0Q2F4
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 16, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)