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Protein
Submitted name:

DNA ligase D

Gene

Acav_2693

Organism
Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAAVE643561:GHRD-2731-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Acav_2693Imported
OrganismiAcidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011)Imported
Taxonomic identifieri643561 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAcidovorax
ProteomesiUP000002482 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.

Sequencei

Sequence statusi: Complete.

F0Q2F4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARRSTASGT AQGAPQKAPQ KAAPDALADY ARKRDFRSTP EPGAEPGDAL
60 70 80 90 100
PRGALRFVVQ KHWASRLHYD FRLEIDGTMK SWAVPKGPSF DPRDKRMAVQ
110 120 130 140 150
VEDHPVAYNR FEGQIPARQY GAGRVIIWDK GYWVPLEDPA RAWRAGKLKF
160 170 180 190 200
ELHGHKLQGR WTLVRMHGRG NERQPPWLLI KERDGLERDA VEYSVVDAMP
210 220 230 240 250
DSVKSLPDLP VPPPAHGRQA RGPAPSGTRR TPARGKAPAS AQSLETTSGR
260 270 280 290 300
TIRAGTSRRP KKAPLPAALA PQLATLVDGP PTGLAEWMFE LKFDGYRILA
310 320 330 340 350
RIEGSEVRLI TRNGNDWTHR MPGLARAVRA LPVESGWIDG EIVVPDRNGI
360 370 380 390 400
PDFQALQNAF ESGRRPGSSA AGTPDGGAVD RSGLVFYVFD LPFLNGHDLR
410 420 430 440 450
GLPLAERREA LRTLVAEAGS DTVRFSDAFE ASPGELIASA CRLGFEGVIG
460 470 480 490 500
KRVSSAYMSG RSADWIKLKC GQRQEFVIGG YTDPQGTRTG LGSLLLGVHG
510 520 530 540 550
DDGQLHYAGN VGSGFSERTL ATLHAQLRSL ATDRSPFAEG TQVGRKAHWV
560 570 580 590 600
KPQLLAEVAF AGWTQTRHVR QAVFRGLRED KPPREIVRET PAPAAAVAGT
610 620 630 640 650
PSTPPAAPRR ASSDATPSRA RSTMTSRRTA SAPSPAAPTS SLRVTHGDRV
660 670 680 690 700
IDAASGTTKL ELVRYYALVA PLMMEHLLQR PVSVVRAPEG VGGELFFQKH
710 720 730 740 750
PEHGSVDGVR TLDPALDPGH PPLAEIAGPE GLPAWAQMNT IEFHSWNARS
760 770 780 790 800
DRIDRPDRIA FDLDPGEGVP WDKVQEAATL MRVMLTELGL PGFLKTSGGK
810 820 830 840 850
GLHVVVPIKR LHGWDAVKGF SQAVVQHMAR TIPQLFVAKS GPRNRVGKIF
860 870 880 890 900
VDYLRNGFGA TTVSAWSARA RPGLGISVPL RWDELGALSS STEWTVATVE
910 920 930
ERLREGNASW EGYDKAAVSI TQAMKMLGYE APRGGR
Length:936
Mass (Da):101,763
Last modified:May 3, 2011 - v1
Checksum:i752016B2986834B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002521 Genomic DNA. Translation: ADX46602.1.
RefSeqiYP_004235169.1. NC_015138.1.

Genome annotation databases

EnsemblBacteriaiADX46602; ADX46602; Acav_2693.
KEGGiaaa:Acav_2693.
PATRICi46840219. VBIAciAve68977_2753.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002521 Genomic DNA. Translation: ADX46602.1.
RefSeqiYP_004235169.1. NC_015138.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADX46602; ADX46602; Acav_2693.
KEGGiaaa:Acav_2693.
PATRICi46840219. VBIAciAve68977_2753.

Phylogenomic databases

KOiK01971.
OMAiHPLDYAD.

Enzyme and pathway databases

BioCyciAAVE643561:GHRD-2731-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Acidovorax avenae subsp. avenae ATCC 19860."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Chertkov O., Held B., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Gordon S., Woyke T.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011Imported.

Entry informationi

Entry nameiF0Q2F4_ACIAP
AccessioniPrimary (citable) accession number: F0Q2F4
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 29, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.