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F0Q2F4

- F0Q2F4_ACIAP

UniProt

F0Q2F4 - F0Q2F4_ACIAP

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Protein
Submitted name: DNA ligase D
Gene
Acav_2693
Organism
Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAAVE643561:GHRD-2731-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Acav_2693Imported
OrganismiAcidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011)Imported
Taxonomic identifieri643561 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAcidovorax
ProteomesiUP000002482: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiNGLPDFQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F0Q2F4-1 [UniParc]FASTAAdd to Basket

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MARRSTASGT AQGAPQKAPQ KAAPDALADY ARKRDFRSTP EPGAEPGDAL    50
PRGALRFVVQ KHWASRLHYD FRLEIDGTMK SWAVPKGPSF DPRDKRMAVQ 100
VEDHPVAYNR FEGQIPARQY GAGRVIIWDK GYWVPLEDPA RAWRAGKLKF 150
ELHGHKLQGR WTLVRMHGRG NERQPPWLLI KERDGLERDA VEYSVVDAMP 200
DSVKSLPDLP VPPPAHGRQA RGPAPSGTRR TPARGKAPAS AQSLETTSGR 250
TIRAGTSRRP KKAPLPAALA PQLATLVDGP PTGLAEWMFE LKFDGYRILA 300
RIEGSEVRLI TRNGNDWTHR MPGLARAVRA LPVESGWIDG EIVVPDRNGI 350
PDFQALQNAF ESGRRPGSSA AGTPDGGAVD RSGLVFYVFD LPFLNGHDLR 400
GLPLAERREA LRTLVAEAGS DTVRFSDAFE ASPGELIASA CRLGFEGVIG 450
KRVSSAYMSG RSADWIKLKC GQRQEFVIGG YTDPQGTRTG LGSLLLGVHG 500
DDGQLHYAGN VGSGFSERTL ATLHAQLRSL ATDRSPFAEG TQVGRKAHWV 550
KPQLLAEVAF AGWTQTRHVR QAVFRGLRED KPPREIVRET PAPAAAVAGT 600
PSTPPAAPRR ASSDATPSRA RSTMTSRRTA SAPSPAAPTS SLRVTHGDRV 650
IDAASGTTKL ELVRYYALVA PLMMEHLLQR PVSVVRAPEG VGGELFFQKH 700
PEHGSVDGVR TLDPALDPGH PPLAEIAGPE GLPAWAQMNT IEFHSWNARS 750
DRIDRPDRIA FDLDPGEGVP WDKVQEAATL MRVMLTELGL PGFLKTSGGK 800
GLHVVVPIKR LHGWDAVKGF SQAVVQHMAR TIPQLFVAKS GPRNRVGKIF 850
VDYLRNGFGA TTVSAWSARA RPGLGISVPL RWDELGALSS STEWTVATVE 900
ERLREGNASW EGYDKAAVSI TQAMKMLGYE APRGGR 936
Length:936
Mass (Da):101,763
Last modified:May 3, 2011 - v1
Checksum:i752016B2986834B5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002521 Genomic DNA. Translation: ADX46602.1.
RefSeqiWP_013595099.1. NC_015138.1.
YP_004235169.1. NC_015138.1.

Genome annotation databases

EnsemblBacteriaiADX46602; ADX46602; Acav_2693.
GeneIDi10307632.
KEGGiaaa:Acav_2693.
PATRICi46840219. VBIAciAve68977_2753.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002521 Genomic DNA. Translation: ADX46602.1 .
RefSeqi WP_013595099.1. NC_015138.1.
YP_004235169.1. NC_015138.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADX46602 ; ADX46602 ; Acav_2693 .
GeneIDi 10307632.
KEGGi aaa:Acav_2693.
PATRICi 46840219. VBIAciAve68977_2753.

Phylogenomic databases

KOi K01971.
OMAi NGLPDFQ.

Enzyme and pathway databases

BioCyci AAVE643561:GHRD-2731-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Acidovorax avenae subsp. avenae ATCC 19860."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Chertkov O., Held B., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Gordon S., Woyke T.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011.

Entry informationi

Entry nameiF0Q2F4_ACIAP
AccessioniPrimary (citable) accession number: F0Q2F4
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: September 3, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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