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F0Q2F4

- F0Q2F4_ACIAP

UniProt

F0Q2F4 - F0Q2F4_ACIAP

Protein
Submitted name:

DNA ligase D

Gene

Acav_2693

Organism
Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (03 May 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciAAVE643561:GHRD-2731-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Acav_2693Imported
    OrganismiAcidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011)Imported
    Taxonomic identifieri643561 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAcidovorax
    ProteomesiUP000002482: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiNGLPDFQ.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    F0Q2F4-1 [UniParc]FASTAAdd to Basket

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    MARRSTASGT AQGAPQKAPQ KAAPDALADY ARKRDFRSTP EPGAEPGDAL    50
    PRGALRFVVQ KHWASRLHYD FRLEIDGTMK SWAVPKGPSF DPRDKRMAVQ 100
    VEDHPVAYNR FEGQIPARQY GAGRVIIWDK GYWVPLEDPA RAWRAGKLKF 150
    ELHGHKLQGR WTLVRMHGRG NERQPPWLLI KERDGLERDA VEYSVVDAMP 200
    DSVKSLPDLP VPPPAHGRQA RGPAPSGTRR TPARGKAPAS AQSLETTSGR 250
    TIRAGTSRRP KKAPLPAALA PQLATLVDGP PTGLAEWMFE LKFDGYRILA 300
    RIEGSEVRLI TRNGNDWTHR MPGLARAVRA LPVESGWIDG EIVVPDRNGI 350
    PDFQALQNAF ESGRRPGSSA AGTPDGGAVD RSGLVFYVFD LPFLNGHDLR 400
    GLPLAERREA LRTLVAEAGS DTVRFSDAFE ASPGELIASA CRLGFEGVIG 450
    KRVSSAYMSG RSADWIKLKC GQRQEFVIGG YTDPQGTRTG LGSLLLGVHG 500
    DDGQLHYAGN VGSGFSERTL ATLHAQLRSL ATDRSPFAEG TQVGRKAHWV 550
    KPQLLAEVAF AGWTQTRHVR QAVFRGLRED KPPREIVRET PAPAAAVAGT 600
    PSTPPAAPRR ASSDATPSRA RSTMTSRRTA SAPSPAAPTS SLRVTHGDRV 650
    IDAASGTTKL ELVRYYALVA PLMMEHLLQR PVSVVRAPEG VGGELFFQKH 700
    PEHGSVDGVR TLDPALDPGH PPLAEIAGPE GLPAWAQMNT IEFHSWNARS 750
    DRIDRPDRIA FDLDPGEGVP WDKVQEAATL MRVMLTELGL PGFLKTSGGK 800
    GLHVVVPIKR LHGWDAVKGF SQAVVQHMAR TIPQLFVAKS GPRNRVGKIF 850
    VDYLRNGFGA TTVSAWSARA RPGLGISVPL RWDELGALSS STEWTVATVE 900
    ERLREGNASW EGYDKAAVSI TQAMKMLGYE APRGGR 936
    Length:936
    Mass (Da):101,763
    Last modified:May 3, 2011 - v1
    Checksum:i752016B2986834B5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002521 Genomic DNA. Translation: ADX46602.1.
    RefSeqiWP_013595099.1. NC_015138.1.
    YP_004235169.1. NC_015138.1.

    Genome annotation databases

    EnsemblBacteriaiADX46602; ADX46602; Acav_2693.
    GeneIDi10307632.
    KEGGiaaa:Acav_2693.
    PATRICi46840219. VBIAciAve68977_2753.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002521 Genomic DNA. Translation: ADX46602.1 .
    RefSeqi WP_013595099.1. NC_015138.1.
    YP_004235169.1. NC_015138.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADX46602 ; ADX46602 ; Acav_2693 .
    GeneIDi 10307632.
    KEGGi aaa:Acav_2693.
    PATRICi 46840219. VBIAciAve68977_2753.

    Phylogenomic databases

    KOi K01971.
    OMAi NGLPDFQ.

    Enzyme and pathway databases

    BioCyci AAVE643561:GHRD-2731-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Acidovorax avenae subsp. avenae ATCC 19860."
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Chertkov O., Held B., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Gordon S., Woyke T.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011Imported.

    Entry informationi

    Entry nameiF0Q2F4_ACIAP
    AccessioniPrimary (citable) accession number: F0Q2F4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 3, 2011
    Last sequence update: May 3, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3