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Protein
Submitted name:

DNA ligase D

Gene

Asphe3_17720

Organism
Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAPHE930171:GJHZ-1767-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Asphe3_17720Imported
OrganismiArthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3)Imported
Taxonomic identifieri930171 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrococcaceaeArthrobacter
ProteomesiUP000008639 Componenti: Chromosome

Family & Domainsi

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

F0MB52-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASEQTTLTV QGPNGGREMR ISSPSRVIWP EPGITKLDLA RYISDVGEAF
60 70 80 90 100
IAANGDRPVA LQRFSGTVDG EMFFSKNPPK GAPDFIRSTK VVFPSARSHP
110 120 130 140 150
MLILDEPAAA VWAVQMNTIV FHPWPSRSDN TDNPDQLRID LDPQPGTDFD
160 170 180 190 200
DAIPAALKLK EVLAEAGLTS YIKTSGNRGL HVYAPIEPRR EFLDVRHAVI
210 220 230 240 250
AAARELERRM PDQVTTAWWK EERGRRVFVD FNQANRDRTI AGAYSPRPLP
260 270 280 290 300
HAPVSCPITW DELENVDPKD FTILTVPERL RTVGDPWADM PSNPGTIDTL
310 320 330 340
LEWWERDLKA GLGELPFPPD YPKMPGEPPR VQPSRARKQD
Length:340
Mass (Da):38,058
Last modified:May 3, 2011 - v1
Checksum:iAC7E994C3C9C3506
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002379 Genomic DNA. Translation: ADX72928.1.
RefSeqiWP_013600860.1. NC_015145.1.
YP_004241062.1. NC_015145.1.

Genome annotation databases

EnsemblBacteriaiADX72928; ADX72928; Asphe3_17720.
KEGGiapn:Asphe3_17720.
PATRICi46861905. VBIArtPhe178037_1762.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002379 Genomic DNA. Translation: ADX72928.1.
RefSeqiWP_013600860.1. NC_015145.1.
YP_004241062.1. NC_015145.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADX72928; ADX72928; Asphe3_17720.
KEGGiapn:Asphe3_17720.
PATRICi46861905. VBIArtPhe178037_1762.

Enzyme and pathway databases

BioCyciAPHE930171:GJHZ-1767-MONOMER.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 18606 / JCM 16027 / LMG 23796 / Sphe3Imported.

Entry informationi

Entry nameiF0MB52_ARTPP
AccessioniPrimary (citable) accession number: F0MB52
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: May 27, 2015
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.