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Protein
Submitted name:

ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD ligase moduleATP-dependent DNA ligase LigD phosphoesterase module

Gene

Asphe3_04250

Organism
Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAPHE930171:GJHZ-425-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD polymerase moduleATP-dependent DNA ligase LigD ligase moduleATP-dependent DNA ligase LigD phosphoesterase moduleImported
Gene namesi
Ordered Locus Names:Asphe3_04250Imported
OrganismiArthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3)Imported
Taxonomic identifieri930171 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicrococcalesMicrococcaceaeArthrobacter
ProteomesiUP000008639 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi930171.Asphe3_04250.

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiSKGIHLY.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F0M9G3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLTNLDKVI YPETGTTKAD VLAYYAAVGH VLIPAAANRP ATRKRWVNGV
60 70 80 90 100
GTADKPGEVF FQKNLEDSAP GWLPRAAITH KDRTIYYPMV NDPATLAWFG
110 120 130 140 150
QINSLEIHVP QWQVDSHGNQ LNPDRLVLDL DPGEGAGIEE CVEVALLARS
160 170 180 190 200
ILEDVGLDPV PVTSGSKGIH LYAALDRSQT SDQISAFARE LARALESDHP
210 220 230 240 250
DLAVSDMKKT LRKGKVLVDW SQNNAAKTTI VPYSLRGRPT PMVAAPRTWE
260 270 280 290 300
EIGSPGLTHL DYHEVMRRVR EGIDPFAAVV RASGHSADDV AAHREDSHDG
310 320 330 340 350
NPRLAKYRSM RDPQATPEPF SGAAGSGDAF VIQEHHASRL HFDLRLEHEG
360 370 380 390 400
VLVSWALPKG VPESSGKNHL AVQTEDHPMD YLTFQGTIPK GEYGAGEMTI
410 420 430 440 450
WDHGTYDLHK WINGKEVIVT LKGSEGGGLG GTRKFALIHT GRGQGKESEG
460 470 480 490 500
QWLIHLMDPE HRGGRRRHAS PRGEQEEAGQ PEAAGEPLQD EAPKNPVTTK
510 520 530 540 550
TAPAKTATTA DDSSAVAAAG AAPSPEDYRP MMATSGDAAD LQGSNWQFEL
560 570 580 590 600
KWDGVRAIVL GDGGAVRIFS RNGIDVSRTY PEFTDRSCWP ERPFVADGEI
610 620 630 640 650
VAVGPAGRPD FGLLQGRMKL TRPADVERAR KAIPVQLMLF DLLHDDGTDL
660 670 680 690 700
RRLPLAKRRQ RLEDFFTPAG CPAQLSPVLE EQVEDILDSA RELGLEGVMA
710 720 730 740 750
KRTDSRYVSG QRTRTWIKLK VEQTQEVVVG GWRPGKGGRE DTVGSLLVGI
760 770 780 790 800
PDGKKLQYAG RVGSGFSGRE LAELRQTVDR LARKTSPFLD VPRPDAADAH
810 820 830 840
WVAPELVGEV TYSEWTGTGR LRHPVWRGWR LDKDPAEVVR EG
Length:842
Mass (Da):92,234
Last modified:May 3, 2011 - v1
Checksum:iA785E9F54FE2BEB7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002379 Genomic DNA. Translation: ADX71640.1.

Genome annotation databases

EnsemblBacteriaiADX71640; ADX71640; Asphe3_04250.
KEGGiapn:Asphe3_04250.
PATRICi46859157. VBIArtPhe178037_0429.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002379 Genomic DNA. Translation: ADX71640.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi930171.Asphe3_04250.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADX71640; ADX71640; Asphe3_04250.
KEGGiapn:Asphe3_04250.
PATRICi46859157. VBIArtPhe178037_0429.

Phylogenomic databases

KOiK01971.
OMAiSKGIHLY.

Enzyme and pathway databases

BioCyciAPHE930171:GJHZ-425-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 18606 / JCM 16027 / LMG 23796 / Sphe3Imported.

Entry informationi

Entry nameiF0M9G3_ARTPP
AccessioniPrimary (citable) accession number: F0M9G3
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: July 22, 2015
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.