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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

Asphe3_38910

Organism
Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAPHE930171:GJHZ-3878-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Asphe3_38910Imported
OrganismiArthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3)Imported
Taxonomic identifieri930171 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrococcaceaeArthrobacter
ProteomesiUP000008639 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliF0M9C5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

F0M9C5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELPVMPPVP PMLAKAVSGI PEGDLSYEPK WDGFRSIIFR DGDDVEIGSR
60 70 80 90 100
NEKPMTRYFP ELVEALKENL PPRCVVDGEI VLIGPSGDRL DFDALQQRIH
110 120 130 140 150
PAASRVRLLA EQTPASFVAF DLLALGDDSY MDRPFTERRA ALEKALAASK
160 170 180 190 200
APVHLTAATT DKDTAQRWFE QFEGAGLDGV VAKRLEGRYE PDKRVMFKTK
210 220 230 240 250
HERTADCVVA GYRLHKSGPD AIGSLLLGLY KDDGGLASVG VIGAFPMKRR
260 270 280 290 300
RELYEQLQQL VTDFDNHPWA WAKQEEGERT PRNAEGSRWS AGKDLSFVPL
310 320 330 340 350
RPELVVEVRY DHMEGDRFRH TAQFNRWRPD RDPESCTYAQ LEEPVSFDLV

SVLETGRP
Length:358
Mass (Da):40,324
Last modified:May 3, 2011 - v1
Checksum:i4A801561331DF9D8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002379 Genomic DNA. Translation: ADX74979.1.
RefSeqiWP_013602859.1. NC_015145.1.
YP_004243113.1. NC_015145.1.

Genome annotation databases

EnsemblBacteriaiADX74979; ADX74979; Asphe3_38910.
KEGGiapn:Asphe3_38910.
PATRICi46866223. VBIArtPhe178037_3880.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002379 Genomic DNA. Translation: ADX74979.1.
RefSeqiWP_013602859.1. NC_015145.1.
YP_004243113.1. NC_015145.1.

3D structure databases

ProteinModelPortaliF0M9C5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADX74979; ADX74979; Asphe3_38910.
KEGGiapn:Asphe3_38910.
PATRICi46866223. VBIArtPhe178037_3880.

Enzyme and pathway databases

BioCyciAPHE930171:GJHZ-3878-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 18606 / JCM 16027 / LMG 23796 / Sphe3Imported.

Entry informationi

Entry nameiF0M9C5_ARTPP
AccessioniPrimary (citable) accession number: F0M9C5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 1, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.