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F0LVM5 (F0LVM5_VIBFN) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886
Gene names
Ordered Locus Names:vfu_A02697 EMBL ADT87814.1
OrganismVibrio furnissii (strain DSM 14383 / NCTC 11218) [Complete proteome] [HAMAP]
Taxonomic identifier903510 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio ›

Protein attributes

Sequence length243 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
   Molecular functionIsomerase RuleBase RU003886
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpseudouridine synthesis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
F0LVM5 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: 1BDFF959D94F22E5

FASTA24328,121
        10         20         30         40         50         60 
MLEIIYQDAY IVAVNKPAGM LVHRSWLDKH ETQFVMQTLR DQIGQHVFPL HRLDRPTSGV 

        70         80         90        100        110        120 
LVFALSSEIA ANMMPMFANH EMEKTYHAIV RGWIEAGDVL DYPLKEELDK IADKFAKQDK 

       130        140        150        160        170        180 
APQDAVTAYQ PLAQVEVPHS TGKFPTTRYC LMEMKPKTGR KHQLRRHMAH LRHPIVGDTT 

       190        200        210        220        230        240 
HGDGKHNRLY REVYDAHRLM LHASELRFVH PYTEQELVLR AGFDATWQRL FALFDWCAPQ 


PSA

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References

[1]"Complete genome sequence of a free-living Vibrio furnissii sp. nov. strain (NCTC 11218)."
Lux T.M., Lee R., Love J.
J. Bacteriol. 193:1487-1488(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 14383 / NCTC 11218.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002377 Genomic DNA. Translation: ADT87814.1.
RefSeqYP_004993826.1. NC_016602.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADT87814; ADT87814; vfu_A02697.
GeneID11634766.
KEGGvfu:vfu_A02697.
PATRIC45429605. VBIVibFur169925_2608.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK06175.

Family and domain databases

InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
[Graphical view]
SUPFAMSSF55120. PsdUridine_synth_cat_dom. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF0LVM5_VIBFN
AccessionPrimary (citable) accession number: F0LVM5
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 3, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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