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F0LJ37 (F0LJ37_THEBM) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phenylalanine--tRNA ligase beta subunit HAMAP-Rule MF_00284
EC=6.1.1.20 HAMAP-Rule MF_00284
Alternative name(s):
Phenylalanyl-tRNA synthetase beta subunit HAMAP-Rule MF_00284
Gene names
Name:pheT HAMAP-Rule MF_00284
Ordered Locus Names:TERMP_00406 EMBL ADT83383.1
OrganismThermococcus barophilus (strain DSM 11836 / MP) [Complete proteome] [HAMAP]
Taxonomic identifier391623 [NCBI]
Taxonomic lineageArchaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Thermococcus ›

Protein attributes

Sequence length559 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). HAMAP-Rule MF_00284

Subunit structure

Tetramer of two alpha and two beta subunits By similarity. HAMAP-Rule MF_00284

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00284.

Sequence similarities

Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 2 subfamily. HAMAP-Rule MF_00284

Contains 1 B5 domain. HAMAP-Rule MF_00284

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain279 – 35476B5 By similarity HAMAP-Rule MF_00284

Sites

Metal binding3321Magnesium By similarity HAMAP-Rule MF_00284
Metal binding3381Magnesium; via carbonyl oxygen By similarity HAMAP-Rule MF_00284
Metal binding3411Magnesium By similarity HAMAP-Rule MF_00284
Metal binding3421Magnesium By similarity HAMAP-Rule MF_00284

Sequences

Sequence LengthMass (Da)Tools
F0LJ37 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: AE8366B045F68F67

FASTA55964,465
        10         20         30         40         50         60 
MPKFDVAKED LERLIGKSFT VEEWEDLFLY AKCELDDIWE ENGKIYFKAD AKDTNRPDLW 

        70         80         90        100        110        120 
SAEGIARQIK WALGMKKGLP EYEVEKSDIV VYVDEKLKDI RPYGVYAVVE NIRLDEEALK 

       130        140        150        160        170        180 
QLIQLQEKIA LTFGRKRREV AIGTFDFDKL KPPFYYKAVE PDKIKFIPLN CEEEMTADEI 

       190        200        210        220        230        240 
LEKHEKGQEY GHLIKGKPYY PLLIDSEGNV LSMPPVINSE THGKVTEKTR NIFIDITGWN 

       250        260        270        280        290        300 
LNKIMLALNV LVTALAERGG KIKSVKVVYK DFEIETPDLT PKEFEVELSY IKKLAGIELS 

       310        320        330        340        350        360 
DEQIKELLER MFYEVDLKDG KAKLKYPAFR DDIMHARDVL EDVLIAYGYN NIEPEEPKLA 

       370        380        390        400        410        420 
VQGKGNDFIE FENAIRELMI GFGLQEVMTF NLTNKEAQFT KMNIPEEEIV EIENPVSLRW 

       430        440        450        460        470        480 
SALRKWLLPS LMEFLSLNTH EEYPQKIFEV GKATLIDETR ETKTVSESKL AVVIAHPRVT 

       490        500        510        520        530        540 
FTEVKEILDS IMHHLGFEYE LEETEHGSFI PGRVGKIVVE GKEVGIIGEI HPQVLENWGI 

       550 
EMPVAAFEIF LRPLYKPSS

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References

[1]"Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP."
Vannier P., Marteinsson V.T., Fridjonsson O.H., Oger P., Jebbar M.
J. Bacteriol. 193:1481-1482(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 11836 / MP.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002372 Genomic DNA. Translation: ADT83383.1.
RefSeqYP_004070606.1. NC_014804.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADT83383; ADT83383; TERMP_00406.
GeneID10040724.
KEGGtba:TERMP_00406.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000105094.
KOK01890.

Family and domain databases

Gene3D3.30.56.20. 1 hit.
HAMAPMF_00284. Phe_tRNA_synth_beta2.
InterProIPR005146. B3/B4_tRNA-bd.
IPR009061. DNA-bd_dom_put.
IPR004531. Phe-tRNA-synth_IIc_bsu_arc.
IPR022918. Phe_tRNA_ligase_beta2_bac/arc.
IPR002319. Phenylalanyl-tRNA_Synthase.
IPR005147. tRNA_synthase_B5-dom.
[Graphical view]
PfamPF03483. B3_4. 1 hit.
PF03484. B5. 1 hit.
PF01409. tRNA-synt_2d. 1 hit.
[Graphical view]
SMARTSM00873. B3_4. 1 hit.
SM00874. B5. 1 hit.
[Graphical view]
SUPFAMSSF46955. Putativ_DNA_bind. 2 hits.
TIGRFAMsTIGR00471. pheT_arch. 1 hit.
PROSITEPS51483. B5. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF0LJ37_THEBM
AccessionPrimary (citable) accession number: F0LJ37
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: May 1, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info