F0L951 (F0L951_AGRSH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL ADY64003.1

Gene names

Name:	alr EMBL ADY64003.1
Ordered Locus Names:	AGROH133_05164 EMBL ADY64003.1

Organism

Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)) [Complete proteome] [HAMAP] EMBL ADY64003.1

Taxonomic identifier

861208 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium

Protein attributes

Sequence length	391 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	F0L951 [UniParc]. Last modified May 3, 2011. Version 1. Checksum: 1DF5160D0E0ED862	FASTA	391	42,228
	10 20 30 40 50 60 MTDDFEDTFP EHETDAFEHA PLRLTVDLGA LADNWRDMKK RSGKARTAAV VKADAYGLGI 70 80 90 100 110 120 EDCGATLYHA GARDFFVATV SEGATLRSYA PEARIFVLSG IWQGQERQVF DNDLVPVLAS 130 140 150 160 170 180 EEQLSFWMAT VAERGEHPCA LHVDTGFNRL GLPLDDALFL ADDVTRPASF DPVLVLSHLA 190 200 210 220 230 240 CADTPSSPMN KVQLESFRKV SAAFEGIESS LSASAGIFLG PDYHFDLTRP GIALYGGEAI 250 260 270 280 290 300 NDVANPMRPV AKAEARIIQI REAGEGQTVS YGGTYLLKRA SRLAIASVGY ADGYQRSLSG 310 320 330 340 350 360 SGIPLREMGH GGAYGIVNGH KAPVAGRVTM DLTIFDITDI PANAVRTGDY IELFGPKVPL 370 380 390 DEVARAAGTI GYEMLTGLGL RYERQYLMAD D

References

[1]

"Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid." Wibberg D., Blom J., Jaenicke S., Kollin F., Rupp O., Scharf B., Schneiker-Bekel S., Sczcepanowski R., Goesmann A., Setubal J.C., Schmitt R., Puhler A., Schluter A. J. Biotechnol. 155:50-62(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: H13-3 EMBL ADY64003.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002248 Genomic DNA. Translation: ADY64003.1.
RefSeq	YP_004278323.1. NC_015183.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADY64003; ADY64003; AGROH133_05164.
GeneID	10266779.
KEGG	agr:AGROH133_05164.
PATRIC	46846828. VBIAgrSp164909_1038.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01775.
Enzyme and pathway databases
BioCyc	ASP861208:GH59-3641-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

F0L951_AGRSH

Accession

Primary (citable) accession number: F0L951

Entry history

Integrated into UniProtKB/TrEMBL:	May 3, 2011
Last sequence update:	May 3, 2011
Last modified:	April 3, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)