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F0JKK2 (F0JKK2_DESDE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 16. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Isocitrate dehydrogenase [NADP] RuleBase RU004446
EC=1.1.1.42 RuleBase RU004446
Gene names
ORF Names:DND132_3248 EMBL EGB16451.1
OrganismDesulfovibrio desulfuricans ND132 EMBL EGB16451.1
Taxonomic identifier641491 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Desulfovibrionales › Desulfovibrionaceae › Desulfovibrio ›

Protein attributes

Sequence length380 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Isocitrate + NADP+ = 2-oxoglutarate + CO2 + NADPH. RuleBase RU004446

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. RuleBase RU004446

Sequence similarities

Belongs to the isocitrate and isopropylmalate dehydrogenases family. RuleBase RU004443

Sequences

Sequence LengthMass (Da)Tools
F0JKK2 [UniParc].

Last modified May 3, 2011. Version 1.
Checksum: BE02A51E49086CD5

FASTA38040,860
        10         20         30         40         50         60 
MATRTVYYIE GDGIGAEVWA AGRPVLNKAV ELAYGGANRL DWQELLAGEK GFAETGEYLP 

        70         80         90        100        110        120 
QATMDALSKA DLAMKGPLNT PVGKGYRSLN VTMRQVFDLY ACIRPIKYFK GIESPVKRPD 

       130        140        150        160        170        180 
LVDMVVFREN TEDVYAGIEY QSGTPEARKL IEFLVDELGA SIDATASVGI KPITPAGSKR 

       190        200        210        220        230        240 
LVRKALDFAI AEGRPSVTLV HKGNIMKTTE GGFRAWGYEL ADEEYQGRVV REGQDGEGVI 

       250        260        270        280        290        300 
LKDRIADAMF QNVLMYPEQY SVIATTNLNG DYISDALAAQ VGGLGLAPGV NMGDKLAFFE 

       310        320        330        340        350        360 
PTHGTAPTIA GKDMANPGSL VLSGAMLLEH IGWHEAAALI HASVEKTLAA KKVTVDLAAQ 

       370        380 
INGSTRVGCK EFGELLLANL

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References

[1]"Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132."
Brown S.D., Gilmour C.C., Kucken A.M., Wall J.D., Elias D.A., Brandt C.C., Podar M., Chertkov O., Held B., Bruce D.C., Detter J.C., Tapia R., Han C.S., Goodwin L.A., Cheng J.F., Pitluck S., Woyke T., Mikhailova N. expand/collapse author list , Ivanova N.N., Han J., Lucas S., Lapidus A.L., Land M.L., Hauser L.J., Palumbo A.V.
J. Bacteriol. 193:2078-2079(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ND132 EMBL EGB16451.1.
[2]"Closure of Desulfovibrio sp. ND132."
Hurt R.A.Jr., Elias D.A., Land M.L., Brown S.D.
Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ND132 EMBL EGB16451.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP003220 Genomic DNA. Translation: EGB16451.1.
RefSeqYP_005169254.1. NC_016803.1.

3D structure databases

ProteinModelPortalF0JKK2.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEGB16451; EGB16451; DND132_3248.
GeneID11741491.
KEGGddn:DND132_3248.
PATRIC46640646. VBIDesSp116210_3343.

Phylogenomic databases

KOK00031.

Family and domain databases

Gene3D3.40.718.10. 1 hit.
InterProIPR019818. IsoCit/isopropylmalate_DH_CS.
IPR001804. Isocitrate/isopropylmalate_DH.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PANTHERPTHR11835. PTHR11835. 1 hit.
PfamPF00180. Iso_dh. 1 hit.
[Graphical view]
PROSITEPS00470. IDH_IMDH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameF0JKK2_DESDE
AccessionPrimary (citable) accession number: F0JKK2
Entry history
Integrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 3, 2013
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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