Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

LIM/homeobox protein Lhx6

Gene

Lhx6

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi248 – 307HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
LIM/homeobox protein Lhx6Imported
Gene namesi
Name:Lhx6Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 2

Organism-specific databases

MGIiMGI:1306803. Lhx6.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiE9QN32.

Expressioni

Gene expression databases

BgeeiENSMUSG00000026890.
ExpressionAtlasiE9QN32. baseline and differential.
GenevisibleiE9QN32. MM.

Structurei

3D structure databases

ProteinModelPortaliE9QN32.
SMRiE9QN32.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini97 – 157LIM zinc-bindingInterPro annotationAdd BLAST61
Domaini158 – 220LIM zinc-bindingInterPro annotationAdd BLAST63
Domaini246 – 306Homeobox DNA-bindingInterPro annotationAdd BLAST61

Keywords - Domaini

HomeoboxPROSITE-ProRule annotationSAAS annotation, LIM domainPROSITE-ProRule annotationSAAS annotation, RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0490. Eukaryota.
ENOG410YIJ3. LUCA.
GeneTreeiENSGT00760000118921.

Family and domain databases

InterProiView protein in InterPro
IPR009057. Homeobox-like.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR001781. Znf_LIM.
PfamiView protein in Pfam
PF00046. Homeobox. 1 hit.
PF00412. LIM. 2 hits.
SMARTiView protein in SMART
SM00389. HOX. 1 hit.
SM00132. LIM. 2 hits.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiView protein in PROSITE
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
PS00478. LIM_DOMAIN_1. 1 hit.
PS50023. LIM_DOMAIN_2. 2 hits.

Sequencei

Sequence statusi: Complete.

E9QN32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYWKHESAAP ALPEGCRLPA EGGPTTDQVM AQPGSGCKAT TRCLEGTAPP
60 70 80 90 100
AMAQSDAEAL AGALDKDEGR ASPCTPSTPS VCSPPSAASS VPSAGKNICS
110 120 130 140 150
SCGLEILDRY LLKVNNLIWH VRCLECSVCR TSLRQQNSCY IKNKEIYCKM
160 170 180 190 200
DYFSRFGTKC ARCGRQIYAS DWVRRARGNA YHLACFACFS CKRQLSTGEE
210 220 230 240 250
FGLVEEKVLC RIHYDTMIEN LKRAAENGNG LTLEGAVPSE QDSQPKPAKR
260 270 280 290 300
ARTSFTAEQL QVMQAQFAQD NNPDAQTLQK LADMTGLSRR VIQVWFQNCR
310 320 330 340 350
ARHKKHTPQH PVPPSGAPPT RLPSALSDDI HYSPFSSPER ARMVTLHGYI
360 370
ESHPFSVLTL PALAHLSMGT TQLPLSR
Length:377
Mass (Da):41,361
Last modified:April 5, 2011 - v1
Checksum:iAD40D809E44B8902
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL773525 Genomic DNA. No translation available.
RefSeqiNP_001076594.1. NM_001083125.1.
UniGeneiMm.12881.

Genome annotation databases

EnsembliENSMUST00000112967; ENSMUSP00000108591; ENSMUSG00000026890.
GeneIDi16874.
UCSCiuc008jlg.1. mouse.

Similar proteinsi

Entry informationi

Entry nameiE9QN32_MOUSE
AccessioniPrimary (citable) accession number: E9QN32
Entry historyiIntegrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: August 30, 2017
This is version 56 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported