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Protein
Submitted name:

Retinoic acid receptor RXR-gamma

Gene

Rxrg

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi13 – 88Nuclear receptorPROSITE-ProRule annotationAdd BLAST76

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation, ReceptorUniRule annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Retinoic acid receptor RXR-gammaImported
Gene namesi
Name:RxrgImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 1

Organism-specific databases

MGIiMGI:98216. Rxrg.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

MaxQBiE9Q9V9.
PaxDbiE9Q9V9.
PeptideAtlasiE9Q9V9.

Expressioni

Gene expression databases

BgeeiENSMUSG00000015843.
ExpressionAtlasiE9Q9V9. baseline and differential.
GenevisibleiE9Q9V9. MM.

Structurei

3D structure databases

ProteinModelPortaliE9Q9V9.
SMRiE9Q9V9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini13 – 88Nuclear receptorInterPro annotationAdd BLAST76

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3575. Eukaryota.
ENOG410XRZC. LUCA.
GeneTreeiENSGT00760000118948.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiView protein in InterPro
IPR035500. NHR_like_dom_sf.
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR000003. Retinoid-X_rcpt/HNF4.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
PfamiView protein in Pfam
PF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
PRINTSiPR00545. RETINOIDXR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiView protein in SMART
SM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiView protein in PROSITE
PS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.

Sequencei

Sequence statusi: Complete.

E9Q9V9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNYPSTSPGS LVKHICAICG DRSSGKHYGV YSCEGCKGFF KRTIRKDLIY
60 70 80 90 100
TCRDNKDCLI DKRQRNRCQY CRYQKCLVMG MKREAVQEER QRSRERAESE
110 120 130 140 150
AECASSSHED MPVERILEAE LAVEPKTESY GDMNVENSTN DPVTNICHAA
160 170 180 190 200
DKQLFTLVEW AKRIPHFSDL TLEDQVILLR AGWNELLIAS FSHRSVSVQD
210 220 230 240 250
GILLATGLHV HRSSAHSAGV GSIFDRVLTE LVSKMKDMQM DKSELGCLRA
260 270 280 290 300
IVLFNPDAKG LSNPSEVETL REKVYATLEA YTKQKYPEQP GRFAKLLLRL
310 320 330 340
PALRSIGLKC LEHLFFFKLI GDTPIDSFLM EMLETPLQIT
Length:340
Mass (Da):38,578
Last modified:April 5, 2011 - v1
Checksum:iEC532299CAB23A87
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC093318 Genomic DNA. No translation available.
AC093452 Genomic DNA. No translation available.
RefSeqiNP_001153203.1. NM_001159731.1.
UniGeneiMm.3475.

Genome annotation databases

EnsembliENSMUST00000111380; ENSMUSP00000107011; ENSMUSG00000015843.
GeneIDi20183.

Similar proteinsi

Entry informationi

Entry nameiE9Q9V9_MOUSE
AccessioniPrimary (citable) accession number: E9Q9V9
Entry historyiIntegrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: November 22, 2017
This is version 58 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported