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Protein
Submitted name:

Retinoic acid receptor RXR-gamma

Gene

Rxrg

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

ReceptorUniRule annotation

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Retinoic acid receptor RXR-gammaImported
Gene namesi
Name:RxrgImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 1

Organism-specific databases

MGIiMGI:98216. Rxrg.

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

MaxQBiE9Q9V9.
PaxDbiE9Q9V9.
PeptideAtlasiE9Q9V9.
PRIDEiE9Q9V9.

Expressioni

Gene expression databases

BgeeiENSMUSG00000015843.
ExpressionAtlasiE9Q9V9. baseline and differential.
GenevisibleiE9Q9V9. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000015987.

Structurei

3D structure databases

ProteinModelPortaliE9Q9V9.
SMRiE9Q9V9. Positions 9-336.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini13 – 8876Nuclear receptor DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation
Contains 1 Nuclear receptor DNA-binding domain.UniRule annotation
Contains nuclear receptor DNA-binding domain.SAAS annotation

Keywords - Domaini

Zinc-fingerUniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG3575. Eukaryota.
ENOG410XRZC. LUCA.
GeneTreeiENSGT00760000118948.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiIPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR000003. Retinoid-X_rcpt/HNF4.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view]
PRINTSiPR00545. RETINOIDXR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiSM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view]
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiPS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E9Q9V9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNYPSTSPGS LVKHICAICG DRSSGKHYGV YSCEGCKGFF KRTIRKDLIY
60 70 80 90 100
TCRDNKDCLI DKRQRNRCQY CRYQKCLVMG MKREAVQEER QRSRERAESE
110 120 130 140 150
AECASSSHED MPVERILEAE LAVEPKTESY GDMNVENSTN DPVTNICHAA
160 170 180 190 200
DKQLFTLVEW AKRIPHFSDL TLEDQVILLR AGWNELLIAS FSHRSVSVQD
210 220 230 240 250
GILLATGLHV HRSSAHSAGV GSIFDRVLTE LVSKMKDMQM DKSELGCLRA
260 270 280 290 300
IVLFNPDAKG LSNPSEVETL REKVYATLEA YTKQKYPEQP GRFAKLLLRL
310 320 330 340
PALRSIGLKC LEHLFFFKLI GDTPIDSFLM EMLETPLQIT
Length:340
Mass (Da):38,578
Last modified:April 5, 2011 - v1
Checksum:iEC532299CAB23A87
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC093318 Genomic DNA. No translation available.
AC093452 Genomic DNA. No translation available.
RefSeqiNP_001153203.1. NM_001159731.1.
UniGeneiMm.3475.

Genome annotation databases

EnsembliENSMUST00000111380; ENSMUSP00000107011; ENSMUSG00000015843.
GeneIDi20183.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC093318 Genomic DNA. No translation available.
AC093452 Genomic DNA. No translation available.
RefSeqiNP_001153203.1. NM_001159731.1.
UniGeneiMm.3475.

3D structure databases

ProteinModelPortaliE9Q9V9.
SMRiE9Q9V9. Positions 9-336.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000015987.

Proteomic databases

MaxQBiE9Q9V9.
PaxDbiE9Q9V9.
PeptideAtlasiE9Q9V9.
PRIDEiE9Q9V9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000111380; ENSMUSP00000107011; ENSMUSG00000015843.
GeneIDi20183.

Organism-specific databases

CTDi6258.
MGIiMGI:98216. Rxrg.

Phylogenomic databases

eggNOGiKOG3575. Eukaryota.
ENOG410XRZC. LUCA.
GeneTreeiENSGT00760000118948.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000015843.
ExpressionAtlasiE9Q9V9. baseline and differential.
GenevisibleiE9Q9V9. MM.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiIPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR000003. Retinoid-X_rcpt/HNF4.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view]
PRINTSiPR00545. RETINOIDXR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiSM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view]
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiPS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiE9Q9V9_MOUSE
AccessioniPrimary (citable) accession number: E9Q9V9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: September 7, 2016
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.