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E9Q9V1

- E9Q9V1_MOUSE

UniProt

E9Q9V1 - E9Q9V1_MOUSE

Protein
Submitted name:

Protein Arid4a

Gene

Arid4a

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 3 out of 5- Protein predictedi
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    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (05 Apr 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: InterPro

    GO - Biological processi

    1. erythrocyte development Source: MGI
    2. establishment of Sertoli cell barrier Source: MGI
    3. histone H3-K4 trimethylation Source: MGI
    4. histone H3-K9 trimethylation Source: MGI
    5. histone H4-K20 trimethylation Source: MGI
    6. negative regulation of transcription, DNA-templated Source: Ensembl
    7. positive regulation of transcription from RNA polymerase II promoter Source: MGI
    8. regulation of gene expression by genetic imprinting Source: MGI
    9. spermatogenesis Source: MGI

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Arid4aImported
    Gene namesi
    Name:Arid4aImported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 12

    Organism-specific databases

    MGIiMGI:2444354. Arid4a.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-KW
    2. transcriptional repressor complex Source: Ensembl

    Keywords - Cellular componenti

    NucleusSAAS annotation

    Expressioni

    Gene expression databases

    ArrayExpressiE9Q9V1.
    BgeeiE9Q9V1.

    Structurei

    3D structure databases

    ProteinModelPortaliE9Q9V1.
    SMRiE9Q9V1. Positions 1-85.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains ARID domain.SAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00510000046413.

    Family and domain databases

    Gene3Di1.10.150.60. 1 hit.
    InterProiIPR001606. ARID/BRIGHT_DNA-bd.
    IPR000953. Chromo_domain/shadow.
    IPR016197. Chromodomain-like.
    IPR025995. Tudor-knot.
    [Graphical view]
    PfamiPF01388. ARID. 1 hit.
    PF11717. Tudor-knot. 1 hit.
    [Graphical view]
    SMARTiSM00501. BRIGHT. 1 hit.
    SM00298. CHROMO. 1 hit.
    [Graphical view]
    SUPFAMiSSF46774. SSF46774. 1 hit.
    SSF54160. SSF54160. 1 hit.
    PROSITEiPS51011. ARID. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    E9Q9V1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEDRGTPINK PPVLGYKDLN LFKLFRLVYH QGGCGNIDSG AVWKQIYMDL    50
    GIPILNSAAS YNVKTAYRKY LYGFEEYCRS ANIQFRTIHH HEPKVKEEKK 100
    DFEDSMDEAL KEAPEMPLLD VKSEPEENTD SNSESDREDT ELKSPRGRRK 150
    IVRDANCIKK EIEEEKIEDK FLRDDLENKD AGDDDDDGDP AAKREHELLF 200
    GRKSTPKNKE KKIKKPEDSE RDSDEEEEKS QEREETESRC DSEGEDEEDD 250
    TEPCLTGTKV KVKYGRGKTQ KIYEASIKST EMDDGEILYL VHYYGWNVRY 300
    DEWVKADRII WPLDKGGPKK KQKKKVKNKE DSEKDEKRDE ERQKSKRGRP 350
    PLKSTFSPNM PYSLSKTSNS EGKSDSCSSD SEADDQLEKS SGGEDLSPDV 400
    KEELEKNENA HDDKLDEENP KIVHISKEND RTQAQPSDTL TVEAGDSDQI 450
    VHIFGDKVDQ VEEFKKQVEK SPKGKGRRSK TKDLSLELIK ISPFGQEEAG 500
    SEAHGDVHSL EFSSLECKNF SSTEDDIDPY E 531
    Length:531
    Mass (Da):60,865
    Last modified:April 5, 2011 - v1
    Checksum:iD919ECCBD3F5CC27
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei531 – 5311Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC112794 Genomic DNA. No translation available.
    AC132325 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSMUST00000135709; ENSMUSP00000121319; ENSMUSG00000048118.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC112794 Genomic DNA. No translation available.
    AC132325 Genomic DNA. No translation available.

    3D structure databases

    ProteinModelPortali E9Q9V1.
    SMRi E9Q9V1. Positions 1-85.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000135709 ; ENSMUSP00000121319 ; ENSMUSG00000048118 .

    Organism-specific databases

    MGIi MGI:2444354. Arid4a.

    Phylogenomic databases

    GeneTreei ENSGT00510000046413.

    Miscellaneous databases

    NextBioi 35555802.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi E9Q9V1.
    Bgeei E9Q9V1.

    Family and domain databases

    Gene3Di 1.10.150.60. 1 hit.
    InterProi IPR001606. ARID/BRIGHT_DNA-bd.
    IPR000953. Chromo_domain/shadow.
    IPR016197. Chromodomain-like.
    IPR025995. Tudor-knot.
    [Graphical view ]
    Pfami PF01388. ARID. 1 hit.
    PF11717. Tudor-knot. 1 hit.
    [Graphical view ]
    SMARTi SM00501. BRIGHT. 1 hit.
    SM00298. CHROMO. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46774. SSF46774. 1 hit.
    SSF54160. SSF54160. 1 hit.
    PROSITEi PS51011. ARID. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    2. Ensembl
      Submitted (MAY-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiE9Q9V1_MOUSE
    AccessioniPrimary (citable) accession number: E9Q9V1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 5, 2011
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3