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Protein
Submitted name:

AT-rich interactive domain 4A (RBP1-like)

Gene

Arid4a

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • erythrocyte development Source: MGI
  • establishment of Sertoli cell barrier Source: MGI
  • histone H3-K4 trimethylation Source: MGI
  • histone H3-K9 trimethylation Source: MGI
  • histone H4-K20 trimethylation Source: MGI
  • negative regulation of transcription, DNA-templated Source: MGI
  • positive regulation of transcription from RNA polymerase II promoter Source: MGI
  • regulation of gene expression by genetic imprinting Source: MGI
  • spermatogenesis Source: MGI

Names & Taxonomyi

Protein namesi
Submitted name:
AT-rich interactive domain 4A (RBP1-like)Imported
Gene namesi
Name:Arid4aImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 12

Organism-specific databases

MGIiMGI:2444354. Arid4a.

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

MaxQBiE9Q9V1.
PaxDbiE9Q9V1.
PeptideAtlasiE9Q9V1.

Expressioni

Gene expression databases

BgeeiENSMUSG00000048118.
ExpressionAtlasiE9Q9V1. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000035512.

Structurei

3D structure databases

ProteinModelPortaliE9Q9V1.
SMRiE9Q9V1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 79ARIDInterPro annotationAdd BLAST79

Phylogenomic databases

eggNOGiKOG2744. Eukaryota.
KOG3001. Eukaryota.
ENOG410Y2AP. LUCA.
GeneTreeiENSGT00550000074575.

Family and domain databases

Gene3Di1.10.150.60. 1 hit.
InterProiView protein in InterPro
IPR001606. ARID_dom.
IPR000953. Chromo/chromo_shadow_dom.
IPR016197. Chromodomain-like.
IPR025995. Tudor-knot.
PfamiView protein in Pfam
PF01388. ARID. 1 hit.
PF11717. Tudor-knot. 1 hit.
SMARTiView protein in SMART
SM00501. BRIGHT. 1 hit.
SM00298. CHROMO. 1 hit.
SUPFAMiSSF46774. SSF46774. 1 hit.
SSF54160. SSF54160. 1 hit.
PROSITEiView protein in PROSITE
PS51011. ARID. 1 hit.

Sequencei

Sequence statusi: Fragment.

E9Q9V1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEDRGTPINK PPVLGYKDLN LFKLFRLVYH QGGCGNIDSG AVWKQIYMDL
60 70 80 90 100
GIPILNSAAS YNVKTAYRKY LYGFEEYCRS ANIQFRTIHH HEPKVKEEKK
110 120 130 140 150
DFEDSMDEAL KEAPEMPLLD VKSEPEENTD SNSESDREDT ELKSPRGRRK
160 170 180 190 200
IVRDANCIKK EIEEEKIEDK FLRDDLENKD AGDDDDDGDP AAKREHELLF
210 220 230 240 250
GRKSTPKNKE KKIKKPEDSE RDSDEEEEKS QEREETESRC DSEGEDEEDD
260 270 280 290 300
TEPCLTGTKV KVKYGRGKTQ KIYEASIKST EMDDGEILYL VHYYGWNVRY
310 320 330 340 350
DEWVKADRII WPLDKGGPKK KQKKKVKNKE DSEKDEKRDE ERQKSKRGRP
360 370 380 390 400
PLKSTFSPNM PYSLSKTSNS EGKSDSCSSD SEADDQLEKS SGGEDLSPDV
410 420 430 440 450
KEELEKNENA HDDKLDEENP KIVHISKEND RTQAQPSDTL TVEAGDSDQI
460 470 480 490 500
VHIFGDKVDQ VEEFKKQVEK SPKGKGRRSK TKDLSLELIK ISPFGQEEAG
510 520 530
SEAHGDVHSL EFSSLECKNF SSTEDDIDPY E
Length:531
Mass (Da):60,865
Last modified:April 5, 2011 - v1
Checksum:iD919ECCBD3F5CC27
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei531Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC112794 Genomic DNA. No translation available.
AC132325 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000135709; ENSMUSP00000121319; ENSMUSG00000048118.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC112794 Genomic DNA. No translation available.
AC132325 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliE9Q9V1.
SMRiE9Q9V1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000035512.

Proteomic databases

MaxQBiE9Q9V1.
PaxDbiE9Q9V1.
PeptideAtlasiE9Q9V1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000135709; ENSMUSP00000121319; ENSMUSG00000048118.

Organism-specific databases

MGIiMGI:2444354. Arid4a.

Phylogenomic databases

eggNOGiKOG2744. Eukaryota.
KOG3001. Eukaryota.
ENOG410Y2AP. LUCA.
GeneTreeiENSGT00550000074575.

Miscellaneous databases

ChiTaRSiArid4a. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000048118.
ExpressionAtlasiE9Q9V1. baseline and differential.

Family and domain databases

Gene3Di1.10.150.60. 1 hit.
InterProiView protein in InterPro
IPR001606. ARID_dom.
IPR000953. Chromo/chromo_shadow_dom.
IPR016197. Chromodomain-like.
IPR025995. Tudor-knot.
PfamiView protein in Pfam
PF01388. ARID. 1 hit.
PF11717. Tudor-knot. 1 hit.
SMARTiView protein in SMART
SM00501. BRIGHT. 1 hit.
SM00298. CHROMO. 1 hit.
SUPFAMiSSF46774. SSF46774. 1 hit.
SSF54160. SSF54160. 1 hit.
PROSITEiView protein in PROSITE
PS51011. ARID. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiE9Q9V1_MOUSE
AccessioniPrimary (citable) accession number: E9Q9V1
Entry historyiIntegrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: March 15, 2017
This is version 48 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.