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E9Q9J0

- E9Q9J0_MOUSE

UniProt

E9Q9J0 - E9Q9J0_MOUSE

Protein
Submitted name:

Ubiquitin-60S ribosomal protein L40

Gene

Uba52

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Ubiquitin-60S ribosomal protein L40Imported
    Gene namesi
    Name:Uba52Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 8

    Organism-specific databases

    MGIiMGI:98887. Uba52.

    Subcellular locationi

    GO - Cellular componenti

    1. cytosolic large ribosomal subunit Source: Ensembl
    2. lysosomal membrane Source: Ensembl

    PTM / Processingi

    Proteomic databases

    PRIDEiE9Q9J0.

    Expressioni

    Gene expression databases

    ArrayExpressiE9Q9J0.
    BgeeiE9Q9J0.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3VHTX-ray2.40C1-76[»]
    ProteinModelPortaliE9Q9J0.
    SMRiE9Q9J0. Positions 1-76.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00750000117491.
    OrthoDBiEOG7JDR1W.

    Family and domain databases

    InterProiIPR001975. Ribosomal_L40e.
    IPR019956. Ubiquitin.
    IPR000626. Ubiquitin-like.
    IPR029071. Ubiquitin-rel_dom.
    IPR019954. Ubiquitin_CS.
    [Graphical view]
    PfamiPF01020. Ribosomal_L40e. 1 hit.
    PF00240. ubiquitin. 1 hit.
    [Graphical view]
    PRINTSiPR00348. UBIQUITIN.
    SMARTiSM00213. UBQ. 1 hit.
    [Graphical view]
    SUPFAMiSSF54236. SSF54236. 1 hit.
    PROSITEiPS00299. UBIQUITIN_1. 1 hit.
    PS50053. UBIQUITIN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    E9Q9J0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL   50
    EDGRTLSDYN IQKESTLHLV LRLRGGIIEP SLRQLAQKYN CDKMIC 96
    Length:96
    Mass (Da):10,914
    Last modified:April 5, 2011 - v1
    Checksum:i4443BC3C15584AF7
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei96 – 961Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC157774 Genomic DNA. No translation available.

    Genome annotation databases

    EnsembliENSMUST00000124967; ENSMUSP00000122797; ENSMUSG00000090137.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC157774 Genomic DNA. No translation available.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3VHT X-ray 2.40 C 1-76 [» ]
    ProteinModelPortali E9Q9J0.
    SMRi E9Q9J0. Positions 1-76.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi E9Q9J0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000124967 ; ENSMUSP00000122797 ; ENSMUSG00000090137 .

    Organism-specific databases

    MGIi MGI:98887. Uba52.

    Phylogenomic databases

    GeneTreei ENSGT00750000117491.
    OrthoDBi EOG7JDR1W.

    Miscellaneous databases

    NextBioi 35555766.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi E9Q9J0.
    Bgeei E9Q9J0.

    Family and domain databases

    InterProi IPR001975. Ribosomal_L40e.
    IPR019956. Ubiquitin.
    IPR000626. Ubiquitin-like.
    IPR029071. Ubiquitin-rel_dom.
    IPR019954. Ubiquitin_CS.
    [Graphical view ]
    Pfami PF01020. Ribosomal_L40e. 1 hit.
    PF00240. ubiquitin. 1 hit.
    [Graphical view ]
    PRINTSi PR00348. UBIQUITIN.
    SMARTi SM00213. UBQ. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54236. SSF54236. 1 hit.
    PROSITEi PS00299. UBIQUITIN_1. 1 hit.
    PS50053. UBIQUITIN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    2. Ensembl
      Submitted (MAY-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.
    3. "Structural analysis of the ubiquitin-binding zinc finger of human Wrnip1in complex with ubiquitin."
      Suzuki N., Wakatsuki S., Kawasaki M.
      Submitted (SEP-2011) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 1-76.

    Entry informationi

    Entry nameiE9Q9J0_MOUSE
    AccessioniPrimary (citable) accession number: E9Q9J0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 5, 2011
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 30 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3