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Protein
Submitted name:

Protein Chd3

Gene

Chd3

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-MMU-73762. RNA Polymerase I Transcription Initiation.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Chd3Imported
Gene namesi
Name:Chd3Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:1344395. Chd3.

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

  • centrosome Source: MGI
  • cytoplasm Source: MGI
  • intermediate filament cytoskeleton Source: MGI
  • nucleolus Source: MGI
  • nucleus Source: MGI
  • NuRD complex Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

EPDiE9Q614.
MaxQBiE9Q614.
PaxDbiE9Q614.
PRIDEiE9Q614.

Expressioni

Gene expression databases

BgeeiE9Q614.
ExpressionAtlasiE9Q614. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000104301.

Structurei

3D structure databases

ProteinModelPortaliE9Q614.
SMRiE9Q614. Positions 427-482, 505-738.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini432 – 47948PHD-typeInterPro annotationAdd
BLAST
Domaini508 – 55548PHD-typeInterPro annotationAdd
BLAST
Domaini588 – 64558ChromoInterPro annotationAdd
BLAST
Domaini683 – 71937ChromoInterPro annotationAdd
BLAST
Domaini800 – 984185Helicase ATP-bindingInterPro annotationAdd
BLAST
Domaini1116 – 1281166Helicase C-terminalInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili5 – 4137Sequence analysisAdd
BLAST
Coiled coili478 – 50528Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerSAAS annotation

Phylogenomic databases

eggNOGiKOG0383. Eukaryota.
COG0553. LUCA.
GeneTreeiENSGT00760000119067.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
3.30.40.10. 2 hits.
3.40.50.300. 2 hits.
InterProiIPR028722. CHD3.
IPR012957. CHD_C2.
IPR012958. CHD_N.
IPR000953. Chromo/shadow_dom.
IPR023780. Chromo_domain.
IPR016197. Chromodomain-like.
IPR002464. DNA/RNA_helicase_DEAH_CS.
IPR009462. DUF1086.
IPR009463. DUF1087.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR009071. HMG_box_dom.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PANTHERiPTHR10799:SF544. PTHR10799:SF544. 3 hits.
PfamiPF08074. CHDCT2. 1 hit.
PF08073. CHDNT. 1 hit.
PF00385. Chromo. 1 hit.
PF06461. DUF1086. 1 hit.
PF06465. DUF1087. 1 hit.
PF00271. Helicase_C. 1 hit.
PF00628. PHD. 2 hits.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM01146. DUF1086. 1 hit.
SM01147. DUF1087. 1 hit.
SM00490. HELICc. 1 hit.
SM00249. PHD. 2 hits.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 1 hit.
SSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 3 hits.
SSF57903. SSF57903. 1 hit.
PROSITEiPS50013. CHROMO_2. 2 hits.
PS00690. DEAH_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS01359. ZF_PHD_1. 2 hits.
PS50016. ZF_PHD_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E9Q614-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASPLRDEEE EEEEMVVSEE EEEEEEEGDE EEEEVEAADE DDEEEDEEGV
60 70 80 90 100
LGRGPGHDRS RDRHSPPSCH LFPPPPPPLP PPPPPDKDDI RLLPSALGVK
110 120 130 140 150
KRKRGPKKQK ENKPGKPRKR KKLDSEEEFG SERDEYREKS ESGGSEYGTG
160 170 180 190 200
PGRKRRRKHR EKKEKKTKRR KRGEGDGGHK QVEQKSSATL LLTWGLEDVE
210 220 230 240 250
HVFSEEDYHT LTNYKAFSQF MRPLIAKKNP KIPMSKMMTI LGAKWREFSA
260 270 280 290 300
NNPFKGSAAA VAAAAAAAAA AVAEQVSAAV SSATPIAPSG PPPALPPPPA
310 320 330 340 350
PEIQPPPIRR AKTKEGKGPG HKRRNKSPRV PDGRKKLRGK KMAPLKIKLG
360 370 380 390 400
LLGGKRKKAG SCAFQSEEGH EPEAEESDLD SGSVHSASGW PDGPVRAKKL
410 420 430 440 450
KRGRPGRKKK KVLGCPAVTG EEEVDGYETD HQDYCEVCQQ GGEIILCDTC
460 470 480 490 500
PRAYHLVCLD PELDRAPEGK WSCPHCEKEG VQWEAKEEEE EYEEEGEEGE
510 520 530 540 550
KEEEDDHMEY CRVCKDGGEL LCCDACISSY HIHCLNPPLP DIPNGEWLCP
560 570 580 590 600
RCTCPVLKGR VQKILHWRWG EPPVAVPAPQ QADGNPDVPP PRPLQGRSER
610 620 630 640 650
EFFVKWVGLS YWHCSWAKEL QLEIFHLVMY RNYQRKNDMD EPPPLDYGSG
660 670 680 690 700
EDDGKSDKRK VKDPHYAEME EKYYRFGIKP EWMTVHRIIN HSMDKKGNYH
710 720 730 740 750
YLVKWKDLPY DQSTWEEDEM NIPEYDDHKQ SYWRHRELIM GEDPAQPRKY
760 770 780 790 800
KKKKKELQGD GPPSSPTNDP TVKYETQPRF ITATGGTLHM YQLEGLNWLR
810 820 830 840 850
FSWAQGTDTI LADEMGLGKT IQTIVFLYSL YKEGHTKGPF LVSAPLSTII
860 870 880 890 900
NWEREFQMWA PKFYVVTYTG DKDSRAIIRE NEFSFEDNAI KGGKKAFKMK
910 920 930 940 950
REAQVKFHVL LTSYELITID QAALGSIRWA CLVVDEAHRL KNNQSKFFRV
960 970 980 990 1000
LNGYKIDHKL LLTGTPLQNN LEELFHLLNF LTPERFNNLE GFLEEFADIS
1010 1020 1030 1040 1050
KEDQIKKLHD LLGPHMLRRL KADVFKNMPA KTELIVRVEL SPMQKKYYKY
1060 1070 1080 1090 1100
ILTRNFEALN SRGGGNQVSL LNIMMDLKKC CNHPYLFPVA AMESPKLPSG
1110 1120 1130 1140 1150
AYEGGALIKS SGKLLLLQKM LRKLKEQGHR VLIFSQMTKM LDLLEDFLDY
1160 1170 1180 1190 1200
EGYKYERIDG GITGALRQEA IDRFNAPGAQ QFCFLLSTRA GGLGINLATA
1210 1220 1230 1240 1250
DTVIIFDSDW NPHNDIQAFS RAHRIGQANK VMIYRFVTRA SVEERITQVA
1260 1270 1280 1290 1300
KRKMMLTHLV VRPGLGSKAG SMSKQELDDI LKFGTEELFK DENEGENKEE
1310 1320 1330 1340 1350
DSSVIHYDNE AIARLLDRNQ DATEDTDVQN MNEYLSSFKV AQYVVREEDK
1360 1370 1380 1390 1400
IEEIEREIIK QEENVDPDYW EKLLRHHYEQ QQEDLARNLG KGKRVRKQVN
1410 1420 1430 1440 1450
YNDAAQEDQD NQSEYSVGSE EEDEDFDERP EGRRQSKRQL RNEKDKPLPP
1460 1470 1480 1490 1500
LLARVGGNIE VLGFNTRQRK AFLNAVMRWG MPPQDAFTTQ WLVRDLRGKT
1510 1520 1530 1540 1550
EKEFKAYVSL FMRHLCEPGA DGSETFADGV PREGLSRQQV LTRIGVMSLV
1560 1570 1580 1590 1600
KKKVQEFEHI NGRWSMPELM PDPSAESKRS SRASSPTKTS PTTPEASTTN
1610 1620 1630 1640 1650
SPCTSKPATP APSEKGDGVR TPLDKDDTEN QEEKPEKNSK VGEKMEAEVD
1660 1670 1680 1690 1700
SPSPAPSLGE RLEHRKILLE DEAPGVPGET EPEPGYRGDR EKSEDVKADR
1710 1720 1730 1740 1750
ELRLGPPRDE PRPNGRREEK VEKPRFMFNI ADGGFTELHT LWQNEERAAI
1760 1770 1780 1790 1800
SSGKLNEIWH RRHDYWLLAG IVLHGYARWQ DIQNDAQFAI INEPFKTEAN
1810 1820 1830 1840 1850
KGNFLEMKNK FLARRFKLLE QALVIEEQLR RAAYLNLSQE PAHPAMALHA
1860 1870 1880 1890 1900
RFAEAECLAE SHQHLSKESL AGNKPANAVL HKVLNQLEEL LSDMKADVTR
1910 1920 1930 1940 1950
LPATLSRIPP IAARLQMSER SILSRLASKG TEPHPTPAFP PGPYATPPGY
1960 1970 1980 1990 2000
GAAFSAAPVG ALAAAGANYS QMPAGSFITA TTNGPPVLVK KEKEMVGALV
2010 2020
SDGLGLDRKE PRAGEVICID D
Length:2,021
Mass (Da):228,973
Last modified:April 5, 2011 - v1
Checksum:i5E06C5E2065FDB92
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596125 Genomic DNA. No translation available.
AL645527 Genomic DNA. No translation available.
RefSeqiXP_006532951.1. XM_006532888.1.
UniGeneiMm.178246.

Genome annotation databases

EnsembliENSMUST00000092971; ENSMUSP00000090649; ENSMUSG00000018474.
GeneIDi216848.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL596125 Genomic DNA. No translation available.
AL645527 Genomic DNA. No translation available.
RefSeqiXP_006532951.1. XM_006532888.1.
UniGeneiMm.178246.

3D structure databases

ProteinModelPortaliE9Q614.
SMRiE9Q614. Positions 427-482, 505-738.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000104301.

Proteomic databases

EPDiE9Q614.
MaxQBiE9Q614.
PaxDbiE9Q614.
PRIDEiE9Q614.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000092971; ENSMUSP00000090649; ENSMUSG00000018474.
GeneIDi216848.

Organism-specific databases

CTDi1107.
MGIiMGI:1344395. Chd3.

Phylogenomic databases

eggNOGiKOG0383. Eukaryota.
COG0553. LUCA.
GeneTreeiENSGT00760000119067.

Enzyme and pathway databases

ReactomeiR-MMU-73762. RNA Polymerase I Transcription Initiation.

Miscellaneous databases

ChiTaRSiChd3. mouse.
NextBioi35555296.
SOURCEiSearch...

Gene expression databases

BgeeiE9Q614.
ExpressionAtlasiE9Q614. baseline and differential.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
3.30.40.10. 2 hits.
3.40.50.300. 2 hits.
InterProiIPR028722. CHD3.
IPR012957. CHD_C2.
IPR012958. CHD_N.
IPR000953. Chromo/shadow_dom.
IPR023780. Chromo_domain.
IPR016197. Chromodomain-like.
IPR002464. DNA/RNA_helicase_DEAH_CS.
IPR009462. DUF1086.
IPR009463. DUF1087.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR009071. HMG_box_dom.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PANTHERiPTHR10799:SF544. PTHR10799:SF544. 3 hits.
PfamiPF08074. CHDCT2. 1 hit.
PF08073. CHDNT. 1 hit.
PF00385. Chromo. 1 hit.
PF06461. DUF1086. 1 hit.
PF06465. DUF1087. 1 hit.
PF00271. Helicase_C. 1 hit.
PF00628. PHD. 2 hits.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM01146. DUF1086. 1 hit.
SM01147. DUF1087. 1 hit.
SM00490. HELICc. 1 hit.
SM00249. PHD. 2 hits.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 1 hit.
SSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 3 hits.
SSF57903. SSF57903. 1 hit.
PROSITEiPS50013. CHROMO_2. 2 hits.
PS00690. DEAH_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS01359. ZF_PHD_1. 2 hits.
PS50016. ZF_PHD_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiE9Q614_MOUSE
AccessioniPrimary (citable) accession number: E9Q614
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: May 11, 2016
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.