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E9Q555

- RN213_MOUSE

UniProt

E9Q555 - RN213_MOUSE

Protein

E3 ubiquitin-protein ligase RNF213

Gene

Rnf213

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 27 (01 Oct 2014)
      Sequence version 1 (05 Apr 2011)
      Previous versions | rss
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    Functioni

    Probable E3 ubiquitin-protein ligase that may play a role in angiogenesis. May also have an ATPase activity By similarity.By similarity

    Pathwayi

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri3946 – 398540RING-typePROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. ATPase activity Source: UniProtKB
    2. ligase activity Source: UniProtKB-KW
    3. nucleotide binding Source: InterPro
    4. ubiquitin-protein transferase activity Source: UniProtKB
    5. zinc ion binding Source: InterPro

    GO - Biological processi

    1. ATP catabolic process Source: UniProtKB
    2. protein autoubiquitination Source: UniProtKB
    3. protein ubiquitination Source: UniProtKB

    Keywords - Molecular functioni

    Ligase

    Keywords - Biological processi

    Ubl conjugation pathway

    Keywords - Ligandi

    Metal-binding, Zinc

    Enzyme and pathway databases

    UniPathwayiUPA00143.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    E3 ubiquitin-protein ligase RNF213 (EC:6.3.2.-)
    Gene namesi
    Name:Rnf213
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 11

    Organism-specific databases

    MGIiMGI:1289196. Rnf213.

    Subcellular locationi

    Cytoplasm By similarity

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 51505150E3 ubiquitin-protein ligase RNF213PRO_0000415918Add
    BLAST

    Post-translational modificationi

    Autoubiquitinates.By similarity

    Keywords - PTMi

    Ubl conjugation

    Proteomic databases

    MaxQBiE9Q555.
    PRIDEiE9Q555.

    Expressioni

    Gene expression databases

    ArrayExpressiE9Q555.
    BgeeiE9Q555.

    Family & Domainsi

    Coiled coil

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Coiled coili3434 – 346431Sequence AnalysisAdd
    BLAST

    Domaini

    The RING-type zinc finger domain is required for the ubiquitin-protein ligase activity.By similarity

    Sequence similaritiesi

    Contains 1 RING-type zinc finger.PROSITE-ProRule annotation

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri3946 – 398540RING-typePROSITE-ProRule annotationAdd
    BLAST

    Keywords - Domaini

    Coiled coil, Zinc-finger

    Phylogenomic databases

    GeneTreeiENSGT00630000089884.
    OrthoDBiEOG7S21WZ.

    Family and domain databases

    Gene3Di3.30.40.10. 1 hit.
    3.40.50.300. 3 hits.
    InterProiIPR003593. AAA+_ATPase.
    IPR027417. P-loop_NTPase.
    IPR001841. Znf_RING.
    IPR013083. Znf_RING/FYVE/PHD.
    IPR017907. Znf_RING_CS.
    [Graphical view]
    SMARTiSM00382. AAA. 2 hits.
    SM00184. RING. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 2 hits.
    PROSITEiPS00518. ZF_RING_1. 1 hit.
    PS50089. ZF_RING_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E9Q555-1 [UniParc]FASTAAdd to Basket

    « Hide

    MECPQCGHVS SEKAPKFCSE CGQKLPSAAT VQGDLKNDNT LVVSSTPEGK     50
    TEQGAVLREE EVLLSSTDPG KELEKPEESD SNASWTTQMS KKEKRRRKRQ 100
    GTISSSEAPS SGLWSLDMPP SPGSHNSALP QNQAQQGGAA SQPGHPLDTE 150
    NMPMEDGFVH TEGSGSPLQG QAAERTDAQS NLAPSDLAEV KDLNTSKPSV 200
    DKGLPLDGGP ALSAFKGHPK MTDASQKAPL PESKGETSGQ EKKVPPIDAA 250
    ASPVKTAGKE TGEDVRKPKP SPVSPVASKH GDQEAELKGK LATPVRKSNE 300
    GGNTQPEDQR KPGEGRNFAA AVKTQQAAAP QQAAAPEPTS AFNPRDTVTV 350
    YFHAIVSRHF GFNPEEHKVY VRGGEGLGQK GWTDACEMYC TQDLHDLGSL 400
    VEGKMDIPRQ SLDKPIPYKY VIHRGGSSKD TVEYEFIYEQ AQKKGEHVNR 450
    CLRVVSTSLG NGDWHQYDDI ICMRSTGFFQ QAKNRILDST RKELLKGKKQ 500
    AAVVMLDRIF SVLQPWSDIN LQSFMTQFLQ FYSVVREPMI HDGRARKWTS 550
    LQYEEKEVWT NLWEHVKKQM APFLEGKSGE SLPADCPVRS KLTLGLSILF 600
    MVEAAEFTVP KKDLDSLCYL LIPSAGSPEA LHSDLSPVLR IRQRWRIYLT 650
    NLCLRCIDER CDRWLGILPL LHTCMQKSPP KKNSKSQPED TWAGLEGISF 700
    SEFRDKAPTS QPLQFMQSKM ALLRVDEYLF RSWLSVVPLE SLSSYLENSI 750
    DYLSDVPVRV LDCLQGISYR LPGLRKISNQ NMKKDVENVF KMLMHLVDIY 800
    QHRIFGENLL QIYLTECLTL HETVCNITAN HQFFEIPALS AELICKLLEL 850
    SPPGHTDEGL PEKSYEDLVT STLQEALATT RNWLRSLFKS RMLSISSAYV 900
    RLTYSEEMAV WRRLVEIGFP EKHGWKGSLL GDMEGRLKQE PPRLQISFFC 950
    SSQCRDGGLH DSVSRSFEKC VIEAVSSACQ SQTSVLEGLS CQDLQKFGTL 1000
    LSAVITKSWP VHNGEPVFDV DEIFKYLLKW PDVRQLFELC GTNEKIIDNI 1050
    TEEGRQLMAT AESVFQKVAG ELENGTIVVG QLELILEHQS QFLDIWNLNR 1100
    RRLPSQEKAC DVRSLLKRRR DDLLFLKQEK RYVESLLRQL GRVKHLVQVD 1150
    FGNIEIIHSQ DLSNKKLNEA VIKLPNSSSY KRETHYCLSP DIREMASKLD 1200
    SLKDSHIFQD FWQETAESLN TLDKDPRELK VSLPEVLEYL YNPCYDNFYT 1250
    LYENLKSGKI TFAEVDAIFK DFVDKYDELK NDLKFMCTMN PQDQKGWISE 1300
    RVGQIKEYHT LHQAVSSAKV ILQVRRALGV TGDFSVLNPL LNFADSFEDF 1350
    GNEKLDQISP QFIKAKQLLQ DISEPRQRCL EELARQTELV AWLHKALEDI 1400
    NELKVFVDLA SISAGENDID VDRVACFHDA VQGYASLLYK MDERTNFSDF 1450
    MNHLQELWRA LDNDQHLPDK LKDSARNLEW LKTVKESHGS VELSSLSLAT 1500
    AINSRGVYVI EAPKDGQKIS PDTVLRLLLP DGHGYPEALR TYSTEELKEL 1550
    LNKLMLMSGK KDHNSNTEVE KFSEVFSNMQ RLVHVFIKLH CAGNMLFRTW 1600
    TAKVYCCPDG GIFMNFGLEL LSQLTEKGDV IQLLGALCRQ MEDFLDNWKT 1650
    VVAQKRAEHF YLNFYTAEQL VYLSSELRKP RPSEAALMML SFIKGKCTVQ 1700
    DLVQATSACE SKADRYCLRE VMKKLPQQLL SEPSLMGKLQ VIMMQSLVYM 1750
    SAFLPHCLDL DALGRCLAHL ATMGGTPVER PLPKGLQAGQ PNLILCGHSE 1800
    VLPAALAIYM QAPRQPLPTF DEVLLCTPAT TIEEVELLLR RCLTSGSQGH 1850
    KVYSLLFADQ LSYEVGCQAE EFFQSLCTRA HREDYQLVIL CDAAREHCYI 1900
    PSTFSQYKVP LVPQAPLPNI QAYLQSHYQV PKRLLSAATV FRDGLCVGIV 1950
    TSERAGVGKS LYVNTLHTKL KAKLRDETVP LKIIRLTEPH LDENQVLSAL 2000
    LPFLKEKYQK MPVIFHIDIS TSVQTGIPIF LFKLLILQYL MDINGKIWRR 2050
    SPGHLYLVEI PQGLSVQPKR SSKLNARAPL FKFLDLFPKV TCRPPKEVID 2100
    MELTPERSHT DPAMDPVEFC SEAFQRPYQY LKRFHQQQNL DTFQYEKGSV 2150
    EGSPEECLQH FLIYCGLINP SWSELRNFAW FLNCQLKDCE ASIFCKSAFT 2200
    GDTLRGFKNF VVTFMILMAR DFATPTLHTS DQSPGRQSVT IGEVVEEDLA 2250
    PFSLRKRWES EPHPYVFFNG DHMTMTFIGF HLETNNNGYV DAINPSNGKV 2300
    IKKDVMTKEL FDGLRLQRVP FNIDFDNLPR YEKLERLCLA LGIEWPIDPD 2350
    ETYELTTDNM LKILAIEMRF RCGIPVIIMG ETGCGKTRLI KFLSDLKRGS 2400
    VEAETMKLVK VHGGTTPSMI YSKVKEAERT AFSNKAQHKL DTILFFDEAN 2450
    TTEAVSCIKE ILCDRTVDGE HLHEDSGLHI IAACNPYRKH SQEMILRLES 2500
    AGLGYRVSAE ETADRLGSIP LRQLVYRVHA LPPSLIPLVW DFGQLNDSAE 2550
    KLYIQQIVQR LVDSVSVNPS ETCVIADVLS ASQMFMRKRE NECGFVSLRD 2600
    VERCVKVFRW FHDHSDMLLK ELDKFLHESS DSTHTFERDP VLWSLVMAIG 2650
    VCYHASLEEK ASYRTAIARC FPKPYNSSRA ILDEVTHVQD LFLRGAPIRT 2700
    NIARNLALKE NVFMMVICIE LKIPLFLVGK PGSSKSLAKI IVADAMQGQA 2750
    AFSELFRCLK QVHLVSFQCS PHSTPQGIIS TFKQCARFQQ GKDLGQYVSV 2800
    VVLDEVGLAE DSPKMPLKTL HPLLEDGCIE DDPAPYKKVG FVGISNWALD 2850
    PAKMNRGIFV SRGSPNEKEL IESAEGICSS DRLVQDKIRG YFAPFAKAYE 2900
    TVCQKQDKEF FGLRDYYSLI KMVFAKAKAS KRGLSPQDIT HAVLRNFSGK 2950
    DNIQALSIFT ASLPEARYKE EVSTVELIKQ NIYPGPQASS RGLDGAESRY 3000
    LLVLTRNYVA LQILQQTFFE GQQPEIIFGS SFPQDQEYTQ ICRNINRVKI 3050
    CMETGKMVVL LNLQNLYESL YDALNQYYVY LGGQKYVDLG LGTHRVKCRV 3100
    HTAFRLIVIE EKDVVYKQFP VPLINRLEKH YLDMNTVLQP WQKSIVQELQ 3150
    QWAHEFADVK ADQFIARHKY SPADVFIGYH SDACASVVLQ AVERQGCRDL 3200
    TEELYRKVSE EARSILLDCA TPDAVVRLSG SSLGSFTAKQ LSQEYYYAQQ 3250
    HNSFVDFLQA HLRMTHHECR AVFTEITTFS RLLTGNDCDV LASELRGLAS 3300
    KPVVLSLQQY DTEYSFLKDV RSWLTNPGKR KVLVIQADFD DGTRSAQLVA 3350
    SAKYTAINEI NKTQGTKDFV FVYFVTKLSR MGSGTSYVGF HGGLWRSVHI 3400
    DDLRRSTIMA SDVTKLQNVT ISQLFKPEDK PEQEEMEIET SQSKELAEEQ 3450
    MEVEDSEEMK KASDPRSCDC SQFLDTTRLV QSCVQGAVGM LRDQNESCAR 3500
    NMRRVTILLD LLNEDNTRNA SFLRESKMRL HVLLNKQEEN QVRSLKEWVT 3550
    REAANQDALQ EAGTFRHTLW KRVQDVVTPI LASMIAHIDR DGNLELLAQP 3600
    DSPAWVQDLW MFIYSDIKFL NISLVLNNTR SNSEMSFILV QSHMNLLKDA 3650
    YNAVPFSWRI RDYLEELWVQ AQYITDTEGL SKKFVEIFQK TPLGVFLAQF 3700
    PVAQQQKLLQ SYLKDFLLLT MKVSSREELM FLQMALWSCL RELQEASGTP 3750
    DETYKFPLSL PWVHLAFQHF RTRLQNFSRI LTIHPQVLSS LSQAAEKHSL 3800
    AGCEMTLDAF AAMACAEMLK GDLLKPSPKA WLQLVKNLST PLELVCSEGY 3850
    LCDSGSMTRS VIQEVRALWN RIFSIALFVE HVLLGTESHI PELSPLVTTY 3900
    VSLLDKCLEE DSNLKTCRPF VAVMTTLCDC KDKASKKFSR FGIQPCFICH 3950
    GDAQDPVCLP CDHVYCLRCI QTWLIPGQMM CPYCLTDLPD KFSPTVSQDH 4000
    RKAIEKHAQF RHMCNSFFVD LVSTMCFKDN TPPEKSVIDT LLSLLFVQKE 4050
    LLRDASQKHR EHTKSLSPFD DVVDQTPVIR SVLLKLLLKY SFHEVKDYIQ 4100
    NYLTQLEKKA FLTEDKTELY LLFISCLEDS VHQKTSAGCR NLEQVLREEG 4150
    HFLRTYSPGL QGQEPVRIAS VEYLQEVARV RLCLDLAADF LSELQEGSEL 4200
    AEDKRRFLKH VEEFCTRVNN DWHRVYLVRK LSSQRGMEFV QSFSKQGHPC 4250
    QWVFPRKVIA QQVRNRDHVS LMDRYLVHGN EYKAVRDATA KAVLECKTLD 4300
    IGNALMACRS PKPQQTAYLL LALYTEVAAL YRSPNGSLHP EAKQLEAVNK 4350
    FIKESKILSD PNIRCFARSL VDNTLPLLKI RSANSILKGT VTEMAVHVAT 4400
    ILLCGHNQIL KPLRNLAFYP VNMANAFLPT MPEDLLVHAR TWRGLENVTW 4450
    YTCPRGHPCS VGECGRPMQE STCLDCGLPV GGLNHTPHEG FSAIRNNEDR 4500
    TQTGHVLGSP QSSGVAEVSD RGQSPVVFIL TRLLTHLAML VGATHNPQAL 4550
    TVIIKPWVQD PQGFLQQHIQ RDLEQLTKML GRSADETIHV VHLILSSLLR 4600
    VQSHGVLNFN AELSTKGCRN NWEKHFETLL LRELKHLDKN LPAINALISQ 4650
    DERISSNPVT KIIYGDPATF LPHLPQKSII HCSKIWSCRR KITVEYLQHI 4700
    VEQKNGKETV PVLWHFLQKE AELRLVKFLP EILALQRDLV KQFQNVSRVE 4750
    YSSIRGFIHS HSSDGLRKLL HDRITIFLST WNALRRSLET NGEIKLPKDY 4800
    CCSDLDLDAE FEVILPRRQG LGLCGTALVS YLISLHNNMV YTVQKFSNED 4850
    NSYSVDISEV ADLHVISYEV ERDLNPLILS NCQYQVQQGG ETSQEFDLEK 4900
    IQRQISSRFL QGKPRLTLKG IPTLVYRRDW NYEHLFMDIK NKMAQSSLPN 4950
    LAISTISGQL QSYSDACEAL SIIEITLGFL STAGGDPGMD LNVYIEEVLR 5000
    MCDQTAQVLK AFSRCQLRHI IALWQFLSAH KSEQRLRLNK ELFREIDVQY 5050
    KEELSTQHQR LLGTFLNEAG LDAFLLELHE MIVLKLKGPR AANSFNPNWS 5100
    LKDTLVSYME TKDSDILSEV ESQFPEEILM SSCISVWKIA ATRKWDRQSR 5150
    Length:5,150
    Mass (Da):584,499
    Last modified:April 5, 2011 - v1
    Checksum:i39FDE76554CC9D89
    GO

    Sequence cautioni

    The sequence BAC37048.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL645911 Genomic DNA. No translation available.
    AK077880 mRNA. Translation: BAC37048.1. Different initiation.
    UniGeneiMm.133342.

    Genome annotation databases

    EnsembliENSMUST00000131035; ENSMUSP00000115063; ENSMUSG00000070327.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL645911 Genomic DNA. No translation available.
    AK077880 mRNA. Translation: BAC37048.1 . Different initiation.
    UniGenei Mm.133342.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    MaxQBi E9Q555.
    PRIDEi E9Q555.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000131035 ; ENSMUSP00000115063 ; ENSMUSG00000070327 .

    Organism-specific databases

    MGIi MGI:1289196. Rnf213.

    Phylogenomic databases

    GeneTreei ENSGT00630000089884.
    OrthoDBi EOG7S21WZ.

    Enzyme and pathway databases

    UniPathwayi UPA00143 .

    Miscellaneous databases

    PROi E9Q555.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi E9Q555.
    Bgeei E9Q555.

    Family and domain databases

    Gene3Di 3.30.40.10. 1 hit.
    3.40.50.300. 3 hits.
    InterProi IPR003593. AAA+_ATPase.
    IPR027417. P-loop_NTPase.
    IPR001841. Znf_RING.
    IPR013083. Znf_RING/FYVE/PHD.
    IPR017907. Znf_RING_CS.
    [Graphical view ]
    SMARTi SM00382. AAA. 2 hits.
    SM00184. RING. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 2 hits.
    PROSITEi PS00518. ZF_RING_1. 1 hit.
    PS50089. ZF_RING_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6J.
    2. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 4809-5150.
      Strain: C57BL/6J.
      Tissue: Testis.

    Entry informationi

    Entry nameiRN213_MOUSE
    AccessioniPrimary (citable) accession number: E9Q555
    Secondary accession number(s): Q8BVK6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 21, 2012
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 27 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3