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Protein
Submitted name:

AT-rich interactive domain-containing protein 1B

Gene

Arid1b

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-MMU-3214858 RMTs methylate histone arginines
R-MMU-8939243 RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known

Names & Taxonomyi

Protein namesi
Submitted name:
AT-rich interactive domain-containing protein 1BImported
Gene namesi
Name:Arid1bImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 17

Organism-specific databases

MGIiMGI:1926129 Arid1b

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

MaxQBiE9Q4N6
PeptideAtlasiE9Q4N6
PRIDEiE9Q4N6

Expressioni

Gene expression databases

BgeeiENSMUSG00000069729
ExpressionAtlasiE9Q4N6 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliE9Q4N6
SMRiE9Q4N6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini579 – 670ARIDInterPro annotationAdd BLAST92

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili1245 – 1271Sequence analysisAdd BLAST27

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2510 Eukaryota
ENOG410Y034 LUCA
GeneTreeiENSGT00550000074575

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR038040 ARID1B
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR016024 ARM-type_fold
IPR021906 BAF250/Osa
IPR033388 BAF250_C
PANTHERiPTHR12656 PTHR12656, 2 hits
PTHR12656:SF11 PTHR12656:SF11, 2 hits
PfamiView protein in Pfam
PF01388 ARID, 1 hit
PF12031 BAF250_C, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
SSF48371 SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit

Sequencei

Sequence statusi: Complete.

E9Q4N6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPGTPGPTM GRSQGSPMDP MVMKRPQLYG MGTHPHSQPQ QSSPYPGGSY
60 70 80 90 100
GPPGAQRYPL GMQGRAPGAL GGLQYPQQQM PPQYGQQAVS GYCQQGQQPY
110 120 130 140 150
YNQQPQPSHL PPQAQYLQPA AAQSQQRYQP QQDMSQEGYG TRSQPPLAPG
160 170 180 190 200
KSNHEDLNLI QQERPSSLPD LSGSIDDLPT GTEATLSSAV SASGSTSSQG
210 220 230 240 250
DQSNPAQSPF SPHASPHLSS IPGGPSPSPV GSPVGSNQSR SGPISPASIP
260 270 280 290 300
GFMTGTQRNP QMSQYGPQQT GPSMSPHPSP GGQMHPGISN FQQSNSSGTY
310 320 330 340 350
GPQMSQYGPQ GNYSRTPTYS GVPSASYSGP GPGMGINANN QMHGQGPAQP
360 370 380 390 400
CGAMPLGRMP SAGMQNRPFP GTMSSVTPSS PGMSQQGGPG MGPPMPTVNR
410 420 430 440 450
KAQEAAAAVM QAAANSAQSR QGSFPGMNQS GLVASSSPYS QSMNNNSSLM
460 470 480 490 500
STQAQPYSMT PTMVNSSTAS MGLADMMSPS ESKLSVPLKA DGKEEGVSQP
510 520 530 540 550
ESKSKDSYGS QGISQPPTPG NLPVPSPMSP SSASISSFHG DESDSISSPG
560 570 580 590 600
WPKTPSSPKS SSSSTTGEKI TKVYELGNEP ERKLWVDRYL TFMEERGSPV
610 620 630 640 650
SSLPAVGKKP LDLFRLYVCV KEIGGLAQVN KNKKWRELAT NLNVGTSSSA
660 670 680 690 700
ASSLKKQYIQ YLFAFECKTE RGEEPPPEVF STGDSKKQPK LQPPSPANSG
710 720 730 740 750
SLQGPQTPQS TGSNSMAEVP GDLKPPTPAS TPHGQMTPMQ SGRSSTVSVH
760 770 780 790 800
DPFSDVSDSA YPKRNSMTPN APYQQGMGMP DMMGRMPYEP NKDPFSGMRK
810 820 830 840 850
VPGSSEPFMT QGQVPNSGMQ DMYNQSPSGA MSNLGMGQRQ QFPYGTSYDR
860 870 880 890 900
RHEAYGQQYP GQGPPTGQPP YGGHQPGLYP QQPNYKRHMD GMYGPPAKRH
910 920 930 940 950
EGDMYNMQYG SQQQEMYNQY GGSYSGPDRR PIQGQYPYPY NRERMQGPGQ
960 970 980 990 1000
MQPHGIPPQM MGGPMQSSSS EGPQQNMWAT RNDMPYPYQS RQGPGGPAQA
1010 1020 1030 1040 1050
PPYPGMNRTD DMMVPEQRIN HESQWPSHVS QRQPYMSSSA SMQPITRPPQ
1060 1070 1080 1090 1100
SSYQTPPSLP NHISRAPSPA SFQRSLESRM SPSKSPFLPT MKMQKVMPTV
1110 1120 1130 1140 1150
PTSQVTGPPP QPPPIRREIT FPPGSVEASQ PILKQRRKIT SKDIVTPEAW
1160 1170 1180 1190 1200
RVMMSLKSGL LAESTWALDT INILLYDDST VATFNLSQLS GFLELLVEYF
1210 1220 1230 1240 1250
RKCLIDIFGI LMEYEVGDPS QKALDHRSGK KDDSQSLEDD SGKEDDDAEC
1260 1270 1280 1290 1300
LVEEEEEEEE EEEDSEKIES EGKSSPALAA PDASVDPKET PKQASKFDKL
1310 1320 1330 1340 1350
PIKIVKKNKL FVVDRSDKLG RVQEFSSGLL HWQLGGGDTT EHIQTHFESK
1360 1370 1380 1390 1400
MEIPPRRRPP PPLSSTGKKK ELEGKGDSEE QPEKSIIATI DDVLSARPGA
1410 1420 1430 1440 1450
LPEDTNPGPQ TDSGKFPFGI QQAKSHRNIR LLEDEPRSRD ETPLCTIAHW
1460 1470 1480 1490 1500
QDSLAKRCIC VSNIVRSLSF VPGNDAEMSK HPGLVLILGK LILLHHEHPE
1510 1520 1530 1540 1550
RKRAPQTYEK EEDEDKGVAC SKDEWWWDCL EVLRDNTLVT LANISGQLDL
1560 1570 1580 1590 1600
SAYTESICLP ILDGLLHWMV CPSAEAQDPF PTVGPNSVLS PQRLVLETLC
1610 1620 1630 1640 1650
KLSIQDNNVD LILATPPFSR QEKFYATLVR YVGDRKNPVC REMSMALLSN
1660 1670 1680 1690 1700
LAQGDTLAAR AIAVQKGSIG NLISFLEDGV TMAQYQQSQH NLMHMQPPPL
1710 1720 1730 1740 1750
EPPSVDMMCR AAKALLAMAR VDENRSEFLL HEGRLLDISI SAVLNSLVAS
1760
VICDVLFQIG QL
Length:1,762
Mass (Da):191,227
Last modified:April 5, 2011 - v1
Checksum:i7A9E9491EF2013E5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC126929 Genomic DNA No translation available.
AC132611 Genomic DNA No translation available.
AC166064 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSMUST00000115799; ENSMUSP00000111465; ENSMUSG00000069729

Similar proteinsi

Entry informationi

Entry nameiE9Q4N6_MOUSE
AccessioniPrimary (citable) accession number: E9Q4N6
Entry historyiIntegrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: April 25, 2018
This is version 53 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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