E9Q4N1 (E9Q4N1_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Semaphorin-6C Ensembl ENSMUSP00000088333 Ensembl ENSMUSP00000123457

Gene names

Name:

Sema6c Ensembl ENSMUSP00000088333 Ensembl ENSMUSP00000123457 MGI 1338032

Organism

Mus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000123457

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	963 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities	Contains 1 Sema domain. SAAS SAAS003659
Caution	The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMUSP00000088333 Ensembl ENSMUSP00000123457

Ontologies

Keywords
PTM	Disulfide bond SAAS SAAS003659
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	multicellular organismal development Inferred from electronic annotation. Source: InterPro
Cellular_component	membrane Inferred from electronic annotation. Source: InterPro
Molecular_function	receptor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E9Q4N1 [UniParc]. Last modified April 5, 2011. Version 1. Checksum: 22FA6E062BE51454	FASTA	963	102,649
	10 20 30 40 50 60 MPRAPHSMPL LLLLLLLSSL PQAQAAFPQD PTPLLTSDLQ GASPSSWFRG LEDDAVAAEL 70 80 90 100 110 120 GLDFQRFLTL NRTLLVAARD HVFSFDLQAQ EEGEGLVPNK FLTWRSQDME NCAVRGKLTD 130 140 150 160 170 180 ECYNYIRVLV PWNSQTLLAC GTNSFSPMCR SYGITSLQQE GEELSGQARC PFDATQSTVA 190 200 210 220 230 240 IFAEGSLYSA TAADFQASDA VVYRSLGPQP PLRSAKYDSK WLREPHFVYA LEHGEHVYFF 250 260 270 280 290 300 FREVSVEDAR LGRVQFSRVA RVCKRDMGGS PRALDRHWTS FLKLRLNCSV PGDSTFYFDV 310 320 330 340 350 360 LQSLTGPVNL HGRSALFGVF TTQTNSIPGS AVCAFYLDDI ERGFEGKFKE QRSLDGAWTP 370 380 390 400 410 420 VSEDKVPSPR PGSCAGVGAA ASFSSSQDLP DDVLLFIKAH PLLDPAVPPA THQPLLTLTS 430 440 450 460 470 480 RALLTQVAVD GMAGPHRNTT VLFLGSNDGT VLKVLPPGGQ SLGSEPIVLE EIDAYSHARC 490 500 510 520 530 540 SGKRSPRAAR RIIGLELDTE GHRLFVAFPG CIVYLSLSRC ARHGACQRSC LASLDPYCGW 550 560 570 580 590 600 HRSRGCMSIR GPGGTDVDLT GNQESTEHGD CQDGATGSQS GPGDSAYVLL GPGPSPETPS 610 620 630 640 650 660 SPSDAQQGPQ SSTLGAHTQG VRRDLSPASA SRSIPIPLLL ACVAAAFALG ASVSGLLVSC 670 680 690 700 710 720 ACRRANRRRS KDIETPGLPR PLSLRSLARL HGGGPEPPPP PKDGDAAQTP QLYTTFLPPP 730 740 750 760 770 780 DGGSPPELAC LPTPETTPEL PVKHLRASGG PWEWNQNGNN ASEGPGRPPR GCSGAGGPAP 790 800 810 820 830 840 RVLVRPPPPG CPGQAVEVTT LEELLRYLHG PQPPRKGSEP LASAPFTSRP PASEPGASLF 850 860 870 880 890 900 VDSSPMPRDG VPPLRLDVPP EGKRAAPSGR PALSAPAPRL GVGGSRRLPF PTHRAPPGLL 910 920 930 940 950 960 TRVPSGGPAR YSGGPGRHLL YLGRPEGHRG RSLKRVDVKS PLSPKPPLAS PPQPAPHGGH FNF

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000088333 Ensembl ENSMUSP00000123457.
[2]	Ensembl Submitted (MAY-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000123457.
[3]	Ensembl Submitted (FEB-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000088333.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC131769 Genomic DNA. No translation available. AC140190 Genomic DNA. No translation available.
IPI	IPI00275829.
RefSeq	NP_001258953.1. NM_001272024.1.
3D structure databases
SMR	E9Q4N1. Positions 26-552.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000090823; ENSMUSP00000088333; ENSMUSG00000038777. ENSMUST00000142449; ENSMUSP00000123457; ENSMUSG00000038777.
GeneID	20360.
KEGG	mmu:20360.
Organism-specific databases
MGI	MGI:1338032. Sema6c.
Phylogenomic databases
GeneTree	ENSGT00690000101956.
KO	K06842.
OMA	LVSCACR.
Family and domain databases
Gene3D	2.130.10.10. 1 hit.
InterPro	IPR003659. Plexin-like. IPR016201. Plexin-like_fold. IPR027231. Semaphorin. IPR001627. Semaphorin/CD100_Ag. IPR015514. Semaphorin_6C. IPR015943. WD40/YVTN_repeat-like_dom. [Graphical view]
PANTHER	PTHR11036. PTHR11036. 1 hit. PTHR11036:SF9. PTHR11036:SF9. 1 hit.
Pfam	PF01403. Sema. 1 hit. [Graphical view]
SMART	SM00423. PSI. 1 hit. SM00630. Sema. 1 hit. [Graphical view]
SUPFAM	SSF103575. Plexin-like_fold. 1 hit. SSF101912. Sema. 1 hit.
PROSITE	PS51004. SEMA. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	35555135.
SOURCE	Search...

Entry information

Entry name

E9Q4N1_MOUSE

Accession

Primary (citable) accession number: E9Q4N1

Entry history

Integrated into UniProtKB/TrEMBL:	April 5, 2011
Last sequence update:	April 5, 2011
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)