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Protein
Submitted name:

Semaphorin-6C

Gene

Sema6c

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  • semaphorin receptor binding Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Semaphorin-6CImported
Gene namesi
Name:Sema6cImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 3

Organism-specific databases

MGIiMGI:1338032. Sema6c.

Expressioni

Gene expression databases

BgeeiE9Q4N1.
ExpressionAtlasiE9Q4N1. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000088331.

Structurei

3D structure databases

ProteinModelPortaliE9Q4N1.
SMRiE9Q4N1. Positions 27-117.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00760000119134.

Family and domain databases

InterProiIPR027231. Semaphorin.
IPR015514. Semaphorin_6C.
[Graphical view]
PANTHERiPTHR11036. PTHR11036. 1 hit.
PTHR11036:SF11. PTHR11036:SF11. 1 hit.

Sequencei

Sequence statusi: Complete.

E9Q4N1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRAPHSMPL LLLLLLLSSL PQAQAAFPQD PTPLLTSDLQ GASPSSWFRG
60 70 80 90 100
LEDDAVAAEL GLDFQRFLTL NRTLLVAARD HVFSFDLQAQ EEGEGLVPNK
110 120
FLTWRSQDME NCAVRGKLTV RSGV
Length:124
Mass (Da):13,661
Last modified:February 19, 2014 - v2
Checksum:i17AFED1E3264A3F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC131769 Genomic DNA. No translation available.
AC140190 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000142449; ENSMUSP00000123457; ENSMUSG00000038777.
UCSCiuc008qig.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC131769 Genomic DNA. No translation available.
AC140190 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliE9Q4N1.
SMRiE9Q4N1. Positions 27-117.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000088331.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000142449; ENSMUSP00000123457; ENSMUSG00000038777.
UCSCiuc008qig.1. mouse.

Organism-specific databases

MGIiMGI:1338032. Sema6c.

Phylogenomic databases

GeneTreeiENSGT00760000119134.

Miscellaneous databases

NextBioi35555135.
SOURCEiSearch...

Gene expression databases

BgeeiE9Q4N1.
ExpressionAtlasiE9Q4N1. baseline and differential.

Family and domain databases

InterProiIPR027231. Semaphorin.
IPR015514. Semaphorin_6C.
[Graphical view]
PANTHERiPTHR11036. PTHR11036. 1 hit.
PTHR11036:SF11. PTHR11036:SF11. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiE9Q4N1_MOUSE
AccessioniPrimary (citable) accession number: E9Q4N1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: February 19, 2014
Last modified: June 24, 2015
This is version 37 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.