E9Q0Z0 (E9Q0Z0_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Semaphorin-3C Ensembl ENSMUSP00000132330

Gene names

Name:

Sema3c Ensembl ENSMUSP00000132330 MGI 107557

Organism

Mus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000132330

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	226 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities	Contains 1 Sema domain. SAAS SAAS001627
Caution	The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMUSP00000132330

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	blood vessel remodeling Inferred from mutant phenotype PubMed 11688556. Source: MGI dichotomous subdivision of terminal units involved in salivary gland branching Inferred from direct assay PubMed 17626059. Source: MGI heart development Inferred from mutant phenotype PubMed 11688556. Source: MGI neural crest cell migration Inferred from mutant phenotype PubMed 11688556. Source: MGI post-embryonic development Inferred from mutant phenotype PubMed 11688556. Source: MGI
Cellular_component	extracellular space Inferred from direct assay PubMed 15239958. Source: MGI
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	226	1	Ensembl ENSMUSP00000132330

Sequences

	Sequence		Length	Mass (Da)
	E9Q0Z0 [UniParc]. Last modified April 5, 2011. Version 1. Checksum: BEC1C7C05FC032E0	FASTA	226	25,641
	10 20 30 40 50 60 MAFRAICVLV GVFICSICVR GSSQPQARVY LTFDELRETK TSEYFSLSHQ QLDYRILLMD 70 80 90 100 110 120 EDQDRIYVGS KDHILSLNIN NISQEPLSVF WPASTIKVEE CKMAGKDPTH GCGNFVRVIQ 130 140 150 160 170 180 TFNRTHLYVC GSGAFSPVCT YLNRGRRSEV FMIDSKCESG KGRCSFNPNV NTVSVMINEE 190 200 210 220 LFSGMYIDFM GTDAAIFRSL TKRNAVRTDQ HNSKWLSEPM FVDAHV

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000132330.
[2]	Ensembl Submitted (MAY-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000132330.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC122936 Genomic DNA. No translation available. AC161507 Genomic DNA. No translation available.
IPI	IPI00988246.
3D structure databases
ProteinModelPortal	E9Q0Z0.
SMR	E9Q0Z0. Positions 23-226.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000169603; ENSMUSP00000132330; ENSMUSG00000028780.
Organism-specific databases
MGI	MGI:107557. Sema3c.
Phylogenomic databases
GeneTree	ENSGT00690000102148.
Gene expression databases
ArrayExpress	E9Q0Z0.
Bgee	E9Q0Z0.
Family and domain databases
Gene3D	2.130.10.10. 1 hit.
InterPro	IPR027231. Semaphorin. IPR001627. Semaphorin/CD100_Ag. IPR015943. WD40/YVTN_repeat-like_dom. [Graphical view]
PANTHER	PTHR11036. PTHR11036. 1 hit.
Pfam	PF01403. Sema. 1 hit. [Graphical view]
SUPFAM	SSF101912. Sema. 1 hit.
PROSITE	PS51004. SEMA. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	35554654.
SOURCE	Search...

Entry information

Entry name

E9Q0Z0_MOUSE

Accession

Primary (citable) accession number: E9Q0Z0

Entry history

Integrated into UniProtKB/TrEMBL:	April 5, 2011
Last sequence update:	April 5, 2011
Last modified:	April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)