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E9PYU4

- E9PYU4_MOUSE

UniProt

E9PYU4 - E9PYU4_MOUSE

Protein
Submitted name:

Chromodomain-helicase-DNA-binding protein 5

Gene

Chd5

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 29 (01 Oct 2014)
      Sequence version 1 (05 Apr 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. ATP-dependent helicase activity Source: InterPro
    3. DNA binding Source: InterPro
    4. zinc ion binding Source: InterPro

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: InterPro

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Chromodomain-helicase-DNA-binding protein 5Imported
    Gene namesi
    Name:Chd5Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 4

    Organism-specific databases

    MGIiMGI:3036258. Chd5.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-KW

    Keywords - Cellular componenti

    NucleusUniRule annotationSAAS annotation

    PTM / Processingi

    Proteomic databases

    PRIDEiE9PYU4.

    Expressioni

    Gene expression databases

    BgeeiE9PYU4.

    Structurei

    3D structure databases

    ProteinModelPortaliE9PYU4.
    SMRiE9PYU4. Positions 340-395, 415-470, 590-646.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    Zinc-fingerSAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00560000076896.
    KOiK14435.

    Family and domain databases

    Gene3Di3.30.40.10. 2 hits.
    3.40.50.300. 2 hits.
    InterProiIPR028727. CHD5.
    IPR012957. CHD_C2.
    IPR012958. CHD_N.
    IPR023780. Chromo_domain.
    IPR000953. Chromo_domain/shadow.
    IPR016197. Chromodomain-like.
    IPR002464. DNA/RNA_helicase_DEAH_CS.
    IPR009462. DUF1086.
    IPR009463. DUF1087.
    IPR014001. Helicase_ATP-bd.
    IPR001650. Helicase_C.
    IPR027417. P-loop_NTPase.
    IPR000330. SNF2_N.
    IPR019786. Zinc_finger_PHD-type_CS.
    IPR011011. Znf_FYVE_PHD.
    IPR001965. Znf_PHD.
    IPR019787. Znf_PHD-finger.
    IPR001841. Znf_RING.
    IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view]
    PANTHERiPTHR10799:SF583. PTHR10799:SF583. 1 hit.
    PfamiPF08074. CHDCT2. 1 hit.
    PF08073. CHDNT. 1 hit.
    PF00385. Chromo. 2 hits.
    PF06461. DUF1086. 1 hit.
    PF06465. DUF1087. 1 hit.
    PF00271. Helicase_C. 1 hit.
    PF00628. PHD. 2 hits.
    PF00176. SNF2_N. 1 hit.
    [Graphical view]
    SMARTiSM00298. CHROMO. 2 hits.
    SM00487. DEXDc. 1 hit.
    SM00490. HELICc. 1 hit.
    SM00249. PHD. 2 hits.
    SM00184. RING. 2 hits.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 2 hits.
    SSF54160. SSF54160. 3 hits.
    SSF57903. SSF57903. 1 hit.
    PROSITEiPS50013. CHROMO_2. 2 hits.
    PS00690. DEAH_ATP_HELICASE. 1 hit.
    PS51192. HELICASE_ATP_BIND_1. 1 hit.
    PS51194. HELICASE_CTER. 1 hit.
    PS01359. ZF_PHD_1. 2 hits.
    PS50016. ZF_PHD_2. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E9PYU4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRGPLGTEEE LPRLFAEEME NEEEMSEEED GGLEGFEDFF PAEPVSLPKK     50
    KPKKLKESKS SKGKRKKKEG SNDEMSDNEE DLEEKSESEG SDYSPTKKKK 100
    KKLKEKKEKK EKKEKRKKRG EDEDDNDDGG LKEPKSSGQL MAEWGLDDVD 150
    YLFSEDDYHT LTNYKAFSQF LRPLIAKKNP KIPMSKMMTV LGAKWREFSA 200
    NNPFKGSSAA AAAAAVAAAV ETVTIAPPLA ISPQQVPQTL PIRKAKTKEG 250
    KGPGVRKKNK GAKDSKKKGR GKRVAGLKFR FGGISKRKKG SSSEEDERED 300
    SDLDNASIHS SSVRSECSAA LGKKNKRRRK KKRIDDGDGY ETDHQDYCEV 350
    CQQGGEIILC DTCPRAYHLV CLDPELEKAP EGKWSCPHCE KEGIQWEPKD 400
    DDEEEEEGGC EEEEDDHMEF CRVCKDGGEL LCCDACPSSY HLHCLNPPLP 450
    EIPNGEWLCP RCTCPPLKGK VQRILHWRWT EPPAPFVVGL PGPEVEPGMP 500
    PPRPLEGIPE REFFVKWAGL SYWHCSWVKE LQLELYHTVM YRNYQRKNDM 550
    DEPPPFDYGS GDEDGKSEKR KNKDPLYAKM EERFYRYGIK PEWMMVHRIL 600
    NHSFDKKGDI HYLIKWKDLP YDQCTWEIDE IDIPYYDNLK QAYWGHRELM 650
    LGEDARLPKR LVKKGKKLKD DKQEKPPDTP IVDPTVKFDK QPWYIDATGG 700
    TLHPYQLEGL NWLRFSWAQG TDTILADEMG LGKTVQTIVF LYSLYKEGHS 750
    KGPYLVSAPL STIINWEREF EMWAPDFYVV TYTGDKESRS VIRENEFSFE 800
    DNAIRGGKKV FRMKKEVQIK FHVLLTSYEL ITIDQAILGS IEWACLVVDE 850
    AHRLKNNQSK FFRVLNSYKI DYKLLLTGTP LQNNLEELFH LLNFLTPERF 900
    NNLEGFLEEF ADISKEDQIK KLHDLLGPHM LRRLKADVFK NMPAKTELIV 950
    RVELSQMQKK YYKFILTRNF EALNSKGGGN QVSLLNIMMD LKKCCNHPYL 1000
    FPVAAVEAPV LPNGSYDGSS LVKSSGKLML LQKMLKKLRD EGHRVLIFSQ 1050
    MTKMLDLLED FLEYEGYKYE RIDGGITGGL RQEAIDRFNA PGAQQFCFLL 1100
    STRAGGLGIN LATADTVIIY DSDWNPHNDI QAFSRAHRIG QNKKVMIYRF 1150
    VTRASVEERI TQVAKRKMML THLVVRPGLG SKSGSMTKQE LDDILKFGTE 1200
    ELFKDDVEGD NKDVEDSSVI HYDDAAISKL LDRNQDATDD TELQNMNEYL 1250
    SSFKVAQYVV REEDGVEEVE REVIKQEENV DPDYWEKLLR HHYEQQQEDL 1300
    ARNLGKGKRI RKQVNYNDAS QEDQEWQDEL SDNQSEYSIG SEDEDEDFEE 1350
    RPEGQSGRRQ SRRQLKSDRD KPLPPLLARV GGNIEVLGFN ARQRKAFLNA 1400
    IMRWGMPPQD AFNSHWLVRD LRGKSEKEFR AYVSLFMRHL CEPGADGAET 1450
    FADGVPREGL SRQHVLTRIG VMSLVRKKVQ EFEHVNGKYS TPDLVPEGAE 1500
    GKKPGEVISS DPNTPVPASP AQLPPAPLGL TDKMEAQLGY TDEKESGMQK 1550
    PKKSLEIQTL PTALDRVEGE DKHQSSDSKD RAREERTEEV EKAQGSPEQP 1600
    LKEEVLPDKE PIPDKPELSL GHSGDFRPDD PKTEEKEPGE TQQNGDREED 1650
    EEGKKEDKNG KFKFMFNIAD GGFTELHTLW QNEERAAVSS GKIYEIWHRR 1700
    HDYWLLAGIV THGYARWQDI QNDPRYMILN EPFKSEIHKG NYLEMKNKFL 1750
    ARRFKLLEQA LVIEEQLRRA AYLNMTQDPN HPAMALNARL AEVECLAESH 1800
    QHLSKESLAG NKPANAVLHK VLNQLEELLS DMKADVTRLP SMLSRIPPVA 1850
    ARLQMSERSI LSRLTNRAGD PTIQQGAFGS SQMYNNSFGP NFRGPGPGGI 1900
    VNYNQMPLGP YVTDI 1915
    Length:1,915
    Mass (Da):218,953
    Last modified:April 5, 2011 - v1
    Checksum:iA5E370E3CFB2A92C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL611985 Genomic DNA. No translation available.
    RefSeqiNP_083492.2. NM_029216.2.
    UniGeneiMm.40192.

    Genome annotation databases

    EnsembliENSMUST00000164662; ENSMUSP00000132600; ENSMUSG00000005045.
    GeneIDi269610.
    KEGGimmu:269610.
    UCSCiuc012dqc.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL611985 Genomic DNA. No translation available.
    RefSeqi NP_083492.2. NM_029216.2.
    UniGenei Mm.40192.

    3D structure databases

    ProteinModelPortali E9PYU4.
    SMRi E9PYU4. Positions 340-395, 415-470, 590-646.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi E9PYU4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000164662 ; ENSMUSP00000132600 ; ENSMUSG00000005045 .
    GeneIDi 269610.
    KEGGi mmu:269610.
    UCSCi uc012dqc.1. mouse.

    Organism-specific databases

    CTDi 26038.
    MGIi MGI:3036258. Chd5.

    Phylogenomic databases

    GeneTreei ENSGT00560000076896.
    KOi K14435.

    Miscellaneous databases

    NextBioi 392923.
    SOURCEi Search...

    Gene expression databases

    Bgeei E9PYU4.

    Family and domain databases

    Gene3Di 3.30.40.10. 2 hits.
    3.40.50.300. 2 hits.
    InterProi IPR028727. CHD5.
    IPR012957. CHD_C2.
    IPR012958. CHD_N.
    IPR023780. Chromo_domain.
    IPR000953. Chromo_domain/shadow.
    IPR016197. Chromodomain-like.
    IPR002464. DNA/RNA_helicase_DEAH_CS.
    IPR009462. DUF1086.
    IPR009463. DUF1087.
    IPR014001. Helicase_ATP-bd.
    IPR001650. Helicase_C.
    IPR027417. P-loop_NTPase.
    IPR000330. SNF2_N.
    IPR019786. Zinc_finger_PHD-type_CS.
    IPR011011. Znf_FYVE_PHD.
    IPR001965. Znf_PHD.
    IPR019787. Znf_PHD-finger.
    IPR001841. Znf_RING.
    IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view ]
    PANTHERi PTHR10799:SF583. PTHR10799:SF583. 1 hit.
    Pfami PF08074. CHDCT2. 1 hit.
    PF08073. CHDNT. 1 hit.
    PF00385. Chromo. 2 hits.
    PF06461. DUF1086. 1 hit.
    PF06465. DUF1087. 1 hit.
    PF00271. Helicase_C. 1 hit.
    PF00628. PHD. 2 hits.
    PF00176. SNF2_N. 1 hit.
    [Graphical view ]
    SMARTi SM00298. CHROMO. 2 hits.
    SM00487. DEXDc. 1 hit.
    SM00490. HELICc. 1 hit.
    SM00249. PHD. 2 hits.
    SM00184. RING. 2 hits.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 2 hits.
    SSF54160. SSF54160. 3 hits.
    SSF57903. SSF57903. 1 hit.
    PROSITEi PS50013. CHROMO_2. 2 hits.
    PS00690. DEAH_ATP_HELICASE. 1 hit.
    PS51192. HELICASE_ATP_BIND_1. 1 hit.
    PS51194. HELICASE_CTER. 1 hit.
    PS01359. ZF_PHD_1. 2 hits.
    PS50016. ZF_PHD_2. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    2. Ensembl
      Submitted (MAY-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiE9PYU4_MOUSE
    AccessioniPrimary (citable) accession number: E9PYU4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 5, 2011
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 29 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3