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E9PYU4

- E9PYU4_MOUSE

UniProt

E9PYU4 - E9PYU4_MOUSE

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Protein
Submitted name:

Chromodomain-helicase-DNA-binding protein 5

Gene

Chd5

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. ATP-dependent helicase activity Source: InterPro
  3. DNA binding Source: InterPro
  4. zinc ion binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Chromodomain-helicase-DNA-binding protein 5Imported
Gene namesi
Name:Chd5Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 4

Organism-specific databases

MGIiMGI:3036258. Chd5.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

MaxQBiE9PYU4.
PRIDEiE9PYU4.

Expressioni

Gene expression databases

BgeeiE9PYU4.
ExpressionAtlasiE9PYU4. baseline.

Structurei

3D structure databases

ProteinModelPortaliE9PYU4.
SMRiE9PYU4. Positions 340-395, 415-470, 590-646.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Zinc-fingerSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00760000119067.
KOiK14435.

Family and domain databases

Gene3Di3.30.40.10. 2 hits.
3.40.50.300. 2 hits.
InterProiIPR028727. CHD5.
IPR012957. CHD_C2.
IPR012958. CHD_N.
IPR023780. Chromo_domain.
IPR000953. Chromo_domain/shadow.
IPR016197. Chromodomain-like.
IPR002464. DNA/RNA_helicase_DEAH_CS.
IPR009462. DUF1086.
IPR009463. DUF1087.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PANTHERiPTHR10799:SF583. PTHR10799:SF583. 1 hit.
PfamiPF08074. CHDCT2. 1 hit.
PF08073. CHDNT. 1 hit.
PF00385. Chromo. 2 hits.
PF06461. DUF1086. 1 hit.
PF06465. DUF1087. 1 hit.
PF00271. Helicase_C. 1 hit.
PF00628. PHD. 2 hits.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SM00249. PHD. 2 hits.
SM00184. RING. 2 hits.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 3 hits.
SSF57903. SSF57903. 1 hit.
PROSITEiPS50013. CHROMO_2. 2 hits.
PS00690. DEAH_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS01359. ZF_PHD_1. 2 hits.
PS50016. ZF_PHD_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E9PYU4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRGPLGTEEE LPRLFAEEME NEEEMSEEED GGLEGFEDFF PAEPVSLPKK
60 70 80 90 100
KPKKLKESKS SKGKRKKKEG SNDEMSDNEE DLEEKSESEG SDYSPTKKKK
110 120 130 140 150
KKLKEKKEKK EKKEKRKKRG EDEDDNDDGG LKEPKSSGQL MAEWGLDDVD
160 170 180 190 200
YLFSEDDYHT LTNYKAFSQF LRPLIAKKNP KIPMSKMMTV LGAKWREFSA
210 220 230 240 250
NNPFKGSSAA AAAAAVAAAV ETVTIAPPLA ISPQQVPQTL PIRKAKTKEG
260 270 280 290 300
KGPGVRKKNK GAKDSKKKGR GKRVAGLKFR FGGISKRKKG SSSEEDERED
310 320 330 340 350
SDLDNASIHS SSVRSECSAA LGKKNKRRRK KKRIDDGDGY ETDHQDYCEV
360 370 380 390 400
CQQGGEIILC DTCPRAYHLV CLDPELEKAP EGKWSCPHCE KEGIQWEPKD
410 420 430 440 450
DDEEEEEGGC EEEEDDHMEF CRVCKDGGEL LCCDACPSSY HLHCLNPPLP
460 470 480 490 500
EIPNGEWLCP RCTCPPLKGK VQRILHWRWT EPPAPFVVGL PGPEVEPGMP
510 520 530 540 550
PPRPLEGIPE REFFVKWAGL SYWHCSWVKE LQLELYHTVM YRNYQRKNDM
560 570 580 590 600
DEPPPFDYGS GDEDGKSEKR KNKDPLYAKM EERFYRYGIK PEWMMVHRIL
610 620 630 640 650
NHSFDKKGDI HYLIKWKDLP YDQCTWEIDE IDIPYYDNLK QAYWGHRELM
660 670 680 690 700
LGEDARLPKR LVKKGKKLKD DKQEKPPDTP IVDPTVKFDK QPWYIDATGG
710 720 730 740 750
TLHPYQLEGL NWLRFSWAQG TDTILADEMG LGKTVQTIVF LYSLYKEGHS
760 770 780 790 800
KGPYLVSAPL STIINWEREF EMWAPDFYVV TYTGDKESRS VIRENEFSFE
810 820 830 840 850
DNAIRGGKKV FRMKKEVQIK FHVLLTSYEL ITIDQAILGS IEWACLVVDE
860 870 880 890 900
AHRLKNNQSK FFRVLNSYKI DYKLLLTGTP LQNNLEELFH LLNFLTPERF
910 920 930 940 950
NNLEGFLEEF ADISKEDQIK KLHDLLGPHM LRRLKADVFK NMPAKTELIV
960 970 980 990 1000
RVELSQMQKK YYKFILTRNF EALNSKGGGN QVSLLNIMMD LKKCCNHPYL
1010 1020 1030 1040 1050
FPVAAVEAPV LPNGSYDGSS LVKSSGKLML LQKMLKKLRD EGHRVLIFSQ
1060 1070 1080 1090 1100
MTKMLDLLED FLEYEGYKYE RIDGGITGGL RQEAIDRFNA PGAQQFCFLL
1110 1120 1130 1140 1150
STRAGGLGIN LATADTVIIY DSDWNPHNDI QAFSRAHRIG QNKKVMIYRF
1160 1170 1180 1190 1200
VTRASVEERI TQVAKRKMML THLVVRPGLG SKSGSMTKQE LDDILKFGTE
1210 1220 1230 1240 1250
ELFKDDVEGD NKDVEDSSVI HYDDAAISKL LDRNQDATDD TELQNMNEYL
1260 1270 1280 1290 1300
SSFKVAQYVV REEDGVEEVE REVIKQEENV DPDYWEKLLR HHYEQQQEDL
1310 1320 1330 1340 1350
ARNLGKGKRI RKQVNYNDAS QEDQEWQDEL SDNQSEYSIG SEDEDEDFEE
1360 1370 1380 1390 1400
RPEGQSGRRQ SRRQLKSDRD KPLPPLLARV GGNIEVLGFN ARQRKAFLNA
1410 1420 1430 1440 1450
IMRWGMPPQD AFNSHWLVRD LRGKSEKEFR AYVSLFMRHL CEPGADGAET
1460 1470 1480 1490 1500
FADGVPREGL SRQHVLTRIG VMSLVRKKVQ EFEHVNGKYS TPDLVPEGAE
1510 1520 1530 1540 1550
GKKPGEVISS DPNTPVPASP AQLPPAPLGL TDKMEAQLGY TDEKESGMQK
1560 1570 1580 1590 1600
PKKSLEIQTL PTALDRVEGE DKHQSSDSKD RAREERTEEV EKAQGSPEQP
1610 1620 1630 1640 1650
LKEEVLPDKE PIPDKPELSL GHSGDFRPDD PKTEEKEPGE TQQNGDREED
1660 1670 1680 1690 1700
EEGKKEDKNG KFKFMFNIAD GGFTELHTLW QNEERAAVSS GKIYEIWHRR
1710 1720 1730 1740 1750
HDYWLLAGIV THGYARWQDI QNDPRYMILN EPFKSEIHKG NYLEMKNKFL
1760 1770 1780 1790 1800
ARRFKLLEQA LVIEEQLRRA AYLNMTQDPN HPAMALNARL AEVECLAESH
1810 1820 1830 1840 1850
QHLSKESLAG NKPANAVLHK VLNQLEELLS DMKADVTRLP SMLSRIPPVA
1860 1870 1880 1890 1900
ARLQMSERSI LSRLTNRAGD PTIQQGAFGS SQMYNNSFGP NFRGPGPGGI
1910
VNYNQMPLGP YVTDI
Length:1,915
Mass (Da):218,953
Last modified:April 5, 2011 - v1
Checksum:iA5E370E3CFB2A92C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL611985 Genomic DNA. No translation available.
RefSeqiNP_083492.2. NM_029216.2.
UniGeneiMm.40192.

Genome annotation databases

EnsembliENSMUST00000164662; ENSMUSP00000132600; ENSMUSG00000005045.
GeneIDi269610.
KEGGimmu:269610.
UCSCiuc012dqc.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL611985 Genomic DNA. No translation available.
RefSeqi NP_083492.2. NM_029216.2.
UniGenei Mm.40192.

3D structure databases

ProteinModelPortali E9PYU4.
SMRi E9PYU4. Positions 340-395, 415-470, 590-646.
ModBasei Search...
MobiDBi Search...

Proteomic databases

MaxQBi E9PYU4.
PRIDEi E9PYU4.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000164662 ; ENSMUSP00000132600 ; ENSMUSG00000005045 .
GeneIDi 269610.
KEGGi mmu:269610.
UCSCi uc012dqc.1. mouse.

Organism-specific databases

CTDi 26038.
MGIi MGI:3036258. Chd5.

Phylogenomic databases

GeneTreei ENSGT00760000119067.
KOi K14435.

Miscellaneous databases

NextBioi 392923.
SOURCEi Search...

Gene expression databases

Bgeei E9PYU4.
ExpressionAtlasi E9PYU4. baseline.

Family and domain databases

Gene3Di 3.30.40.10. 2 hits.
3.40.50.300. 2 hits.
InterProi IPR028727. CHD5.
IPR012957. CHD_C2.
IPR012958. CHD_N.
IPR023780. Chromo_domain.
IPR000953. Chromo_domain/shadow.
IPR016197. Chromodomain-like.
IPR002464. DNA/RNA_helicase_DEAH_CS.
IPR009462. DUF1086.
IPR009463. DUF1087.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
IPR019786. Zinc_finger_PHD-type_CS.
IPR011011. Znf_FYVE_PHD.
IPR001965. Znf_PHD.
IPR019787. Znf_PHD-finger.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view ]
PANTHERi PTHR10799:SF583. PTHR10799:SF583. 1 hit.
Pfami PF08074. CHDCT2. 1 hit.
PF08073. CHDNT. 1 hit.
PF00385. Chromo. 2 hits.
PF06461. DUF1086. 1 hit.
PF06465. DUF1087. 1 hit.
PF00271. Helicase_C. 1 hit.
PF00628. PHD. 2 hits.
PF00176. SNF2_N. 1 hit.
[Graphical view ]
SMARTi SM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SM00249. PHD. 2 hits.
SM00184. RING. 2 hits.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 3 hits.
SSF57903. SSF57903. 1 hit.
PROSITEi PS50013. CHROMO_2. 2 hits.
PS00690. DEAH_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS01359. ZF_PHD_1. 2 hits.
PS50016. ZF_PHD_2. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiE9PYU4_MOUSE
AccessioniPrimary (citable) accession number: E9PYU4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: October 29, 2014
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3