E9PX28 (E9PX28_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein Pcdh10 Ensembl ENSMUSP00000131600

Gene names

Name:

Pcdh10 Ensembl ENSMUSP00000131600 MGI 1338042

Organism

Mus musculus (Mouse) [Reference proteome] Ensembl ENSMUSP00000131600

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	1047 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain By similarity. SAAS SAAS020894
Sequence similarities	Contains 6 cadherin domains. SAAS SAAS020894
Caution	The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSMUSP00000131600

Ontologies

Keywords
Biological process	Cell adhesion SAAS SAAS020894
Cellular component	Cell membrane SAAS SAAS013164 Membrane
Domain	Repeat SAAS SAAS020894 Transmembrane Transmembrane helix SAAS SAAS020894
Ligand	Calcium RuleBase RU000484 SAAS SAAS020894
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	homophilic cell adhesion Inferred from direct assay PubMed 9920663. Source: MGI
Cellular_component	integral to plasma membrane Inferred from sequence or structural similarity PubMed 9920663. Source: MGI
Molecular_function	calcium ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E9PX28 [UniParc]. Last modified April 5, 2011. Version 1. Checksum: 338378F1AB304303	FASTA	1,047	113,993
	10 20 30 40 50 60 MIVLLFFALL WMVDGVFSQL HYTVQEEQEH GTFVGNIAED LGLDITKLSA RRFQTVANSR 70 80 90 100 110 120 TPYLDLNLET GVLYVNEKID REQICKQSPS CVLHLEVFLE NPLELFRVEI EVLDINDNPP 130 140 150 160 170 180 SFPEPDLTVE ISESATPGTR FPLESAFDPD VGTNSLRDYE ITPNSYFSLD VQTQGDGNRF 190 200 210 220 230 240 AELVLEKPLD REQQAVHRYV LTAVDGGGGG GGGEGGGGGG GAGLPPQQQR TGTALLTIRV 250 260 270 280 290 300 LDSNDNVPAF DQPVYTVSLP ENSPPGTLVI QLNATDPDEG QNGEVVYSFS SHISPRAREL 310 320 330 340 350 360 FGLSPRTGRL EVSGELDYEE SPVYQVYVQA KDLGPNAVPA HCKVLVRVLD ANDNAPEISF 370 380 390 400 410 420 STVKEAVSEG AAPGTVVALF SVTDRDSEEN GQVQCELLGD VPFRLKSSFK NYYTIVTEAP 430 440 450 460 470 480 LDREAGDSYT LTVVARDRGE PALSTSKSIQ VQVSDVNDNA PRFSQPVYDV YVTENNVPGA 490 500 510 520 530 540 YIYAVSATDR DEGANAKLTY SILECQIQGM SVFTYVSINS DNGYLYALRS FDYEQIKDFS 550 560 570 580 590 600 FQVEARDAGS PQALAGNATV NILIVDQNDN APAIVAPLPG RNGTPAREVL PRSAEPGYLL 610 620 630 640 650 660 TRVAAVDADD GENARLTYSI VRGNEMNLFR LDWRTGELRT ARRVPAKRDP QRPYELVIEV 670 680 690 700 710 720 RDHGQPPLSS TATLVVQLVD GAVEPQGGGG DRGGGSGEHL RPSRSGGGET SLDLTLILII 730 740 750 760 770 780 ALGSVSFIFL LAMIVLAVRC QKEKKLNIYT CLASDCCLCC CCCGNGSSTC CGRQARARKK 790 800 810 820 830 840 KLSKSDIMLV QSANVPSNPA QVPVEESGGF GSHHHNQNYC YQVCLTPESA KTDLMFLKPC 850 860 870 880 890 900 SPSRSTDAEH NPCGAIVTGY SDQQPDIISN GSILSNENKH QRAELSYLVD RPRRVNSSAF 910 920 930 940 950 960 QEADIVSSKD SGHGDSEQGD SDHDVTNRGQ SAGMDLFSNC TEECKALGHS DRCWMPSFVP 970 980 990 1000 1010 1020 SDGRQAADYR SNLHVPGMDS VPDTEVFEPP EVQPGAERSF STFGKEKALH GTLERKELDG 1030 1040 LLSNTRAPYK PPYLNHFHPL SCFAHWK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J Ensembl ENSMUSP00000131600.
[2]	Ensembl Submitted (MAY-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000131600.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC108393 Genomic DNA. No translation available.
IPI	IPI00849380.
RefSeq	NP_001091642.1. NM_001098172.1.
UniGene	Mm.242644.
3D structure databases
ProteinModelPortal	E9PX28.
SMR	E9PX28. Positions 18-680.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000171554; ENSMUSP00000131600; ENSMUSG00000049100.
GeneID	18526.
KEGG	mmu:18526.
Organism-specific databases
CTD	57575.
MGI	MGI:1338042. Pcdh10.
Phylogenomic databases
GeneTree	ENSGT00690000101988.
KO	K16499.
Gene expression databases
ArrayExpress	E9PX28.
Bgee	E9PX28.
Family and domain databases
Gene3D	2.60.40.60. 6 hits.
InterPro	IPR002126. Cadherin. IPR015919. Cadherin-like. IPR020894. Cadherin_CS. IPR013164. Cadherin_N. [Graphical view]
Pfam	PF00028. Cadherin. 4 hits. PF08266. Cadherin_2. 1 hit. [Graphical view]
PRINTS	PR00205. CADHERIN.
SMART	SM00112. CA. 6 hits. [Graphical view]
SUPFAM	SSF49313. Cadherin. 6 hits.
PROSITE	PS00232. CADHERIN_1. 5 hits. PS50268. CADHERIN_2. 6 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	294284.
SOURCE	Search...

Entry information

Entry name

E9PX28_MOUSE

Accession

Primary (citable) accession number: E9PX28

Entry history

Integrated into UniProtKB/TrEMBL:	April 5, 2011
Last sequence update:	April 5, 2011
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)