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Protein
Submitted name:

Protein Xndc1

Gene

Trpc2

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. damaged DNA binding Source: InterPro

GO - Biological processi

  1. single strand break repair Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Xndc1Imported
Submitted name:
Short transient receptor potential channel 2Imported
Gene namesi
Name:Trpc2Imported
Synonyms:Xndc1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 7

Organism-specific databases

MGIiMGI:109527. Trpc2.
MGI:5546359. Xndc1.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000004140.
ENSGT00760000119180.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR002706. Xrcc1_N.
[Graphical view]
PfamiPF01834. XRCC1_N. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.

Sequencei

Sequence statusi: Complete.

E9PVR2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPVKISHVV SFSSQDPKYP VENLLNPDSH RGPWLSCPQD KTGQLKVEFQ
60 70 80 90 100
LERAVPISYI DVGNCGCAFL QIDVGRSSWP LDRPFVTLLP ATMLMSRTDS
110 120 130 140 150
KSGKNRSGVR MFKDGDFLTP ASGESWDRLR LTCSQPFTRH QSFGLAFLRV
160 170 180 190 200
RSSLGSLADP VVDPSAPGSS GLNQNSTDVL ESDPRPWLTN PSIRRTFFPD
210 220 230 240 250
PQTSTKEISE LKGMLKQLQP GPLGRAARMV LSAARKAPPA SVVSPNNSHG
260 270 280 290 300
EPGPSRAESA EPRAEEPNRK TAVGRRKRRK VQEPRRSLSN SSSQPNRRTG
310 320 330 340 350
RTRQRQHRPQ TKSDDGGVQA AGQCPICAGF FSIETLPQHA ATCGESPPPQ
360 370 380 390 400
PASPASLSSS ESVLWVSSPE SSPPPSWVQC PICELQFSAR EIEEHASVCG

EVLPA
Length:405
Mass (Da):44,090
Last modified:April 5, 2011 - v1
Checksum:iADC786C1DAC19FDB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC132297 Genomic DNA. No translation available.
AC150275 Genomic DNA. No translation available.
RefSeqiNP_001273618.1. NM_001286689.1.
NP_001273619.1. NM_001286690.1.
UniGeneiMm.292904.

Genome annotation databases

EnsembliENSMUST00000094130; ENSMUSP00000091680; ENSMUSG00000099481.
ENSMUST00000106950; ENSMUSP00000102563; ENSMUSG00000099481.
ENSMUST00000123372; ENSMUSP00000121068; ENSMUSG00000070425.
GeneIDi102443350.
KEGGimmu:102443350.
UCSCiuc009iqj.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC132297 Genomic DNA. No translation available.
AC150275 Genomic DNA. No translation available.
RefSeqiNP_001273618.1. NM_001286689.1.
NP_001273619.1. NM_001286690.1.
UniGeneiMm.292904.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000094130; ENSMUSP00000091680; ENSMUSG00000099481.
ENSMUST00000106950; ENSMUSP00000102563; ENSMUSG00000099481.
ENSMUST00000123372; ENSMUSP00000121068; ENSMUSG00000070425.
GeneIDi102443350.
KEGGimmu:102443350.
UCSCiuc009iqj.1. mouse.

Organism-specific databases

CTDi102443350.
MGIiMGI:109527. Trpc2.
MGI:5546359. Xndc1.

Phylogenomic databases

GeneTreeiENSGT00390000004140.
ENSGT00760000119180.

Miscellaneous databases

NextBioi35553918.
SOURCEiSearch...

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
InterProiIPR008979. Galactose-bd-like.
IPR002706. Xrcc1_N.
[Graphical view]
PfamiPF01834. XRCC1_N. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiE9PVR2_MOUSE
AccessioniPrimary (citable) accession number: E9PVR2
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: April 29, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.