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Protein
Submitted name:

Serine/arginine repetitive matrix protein 1

Gene

Srrm1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-MMU-109688. Cleavage of Growing Transcript in the Termination Region.
R-MMU-159236. Transport of Mature mRNA derived from an Intron-Containing Transcript.
R-MMU-72163. mRNA Splicing - Major Pathway.
R-MMU-72187. mRNA 3'-end processing.

Names & Taxonomyi

Protein namesi
Submitted name:
Serine/arginine repetitive matrix protein 1Imported
Gene namesi
Name:Srrm1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:1858303. Srrm1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiE9PUK6.
PRIDEiE9PUK6.

Expressioni

Gene expression databases

BgeeiE9PUK6.
ExpressionAtlasiE9PUK6. baseline and differential.
GenevisibleiE9PUK6. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000125003.

Structurei

3D structure databases

ProteinModelPortaliE9PUK6.
SMRiE9PUK6. Positions 27-134.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini27 – 126100PWIInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG2146. Eukaryota.
ENOG4111IMU. LUCA.
GeneTreeiENSGT00730000111080.
KOiK13171.
OMAiASAPKHK.
TreeFamiTF318972.

Family and domain databases

Gene3Di1.20.1390.10. 1 hit.
InterProiIPR002483. PWI_dom.
[Graphical view]
PfamiPF01480. PWI. 1 hit.
[Graphical view]
SMARTiSM00311. PWI. 1 hit.
[Graphical view]
SUPFAMiSSF101233. SSF101233. 1 hit.
PROSITEiPS51025. PWI. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E9PUK6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDAGFFRGTS AEQDNRFSNK QKKLLKQLKF AECLEKKVDM SKVNLEVIKP
60 70 80 90 100
WITKRVTEIL GFEDDVVIEF IFNQLEVKNP DSKMMQINLT GFLNGKNARE
110 120 130 140 150
FMGELWPLLL SAQENIAGIP SAFLELKKEE IKQRQIEQEK LASLKKQDED
160 170 180 190 200
KDKRDKEEKE SSREKRERSR SPRRRKSRSP SPRRRSSPVR RERKRSHSRS
210 220 230 240 250
PRHRTKSRSP SPAPEKKEKS PELPEPSVRM KDSSVQEATS TSDILKAPKP
260 270 280 290 300
EPVPEPKEPS PEKNSKKEKE KTRPRSRSRS KSRSRTRSRS PSHTRPRRRH
310 320 330 340 350
RSRSRSYSPR RRPSPRRRPS PRRRTPPRRM PPPPRHRRSR SPGRRRRRSS
360 370 380 390 400
ASLSGSSSSS SSSRSRSPPK KPPKRTSSPP RKTRRLSPSA SPPRRRHRPS
410 420 430 440 450
SPATPPPKTR HSPTPQQSNR TRKSRVSVSP GRTSGKVTKH KGTEKRESPS
460 470 480 490 500
PAPKPRKVEL SESEEDKGSK MAAADSVQQR RQYRRQNQQS SSDSGSSSTS
510 520 530 540 550
EDERPKRSHV KNGEVGRRRR HSPSRSASPS PRKRQKETSP RMQMGKRWQS
560 570 580 590 600
PVTKSSRRRR SPSPPPARRR RSPSPAPPPP PPPPPPRRRR SPTPPPRRRT
610 620 630 640 650
PSPPPRRRSP SPRRYSPPIQ RRYSPSPPPK RRTASPPPPP KRRASPSPPP
660 670 680 690 700
KRRVSHSPPP KQRSPTVTKR RSPSLSSKHR KGSSPGRSTR EARSPQPNKR
710 720 730 740 750
HSPSPRPRAP QTSSPPPVRR GASASPQGRQ SPSPSTRPIR RVSRTPEPKK
760 770 780 790 800
IKKAASPSPQ SVRRVSSSRS VSGSPEPAAK KPPAPPSPVQ SQSPSTNWSP
810 820 830 840 850
AVPAKKAKSP TPSLSPARNS DQEGGGKKKK KKKDKKHKKD KKHKKHKKHK
860 870 880 890 900
KEKAVTIATP ATAAPAAVSA ATTTSAQEEP AAAPEPRKET ESEAEDDNLD
910 920
DLERHLREKA LRSMRKAQVS PQS
Length:923
Mass (Da):104,306
Last modified:April 5, 2011 - v1
Checksum:i63A4B11B248BDB06
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL627078 Genomic DNA. No translation available.
AL627185 Genomic DNA. No translation available.
RefSeqiNP_058079.2. NM_016799.3.
UniGeneiMm.1963.

Genome annotation databases

EnsembliENSMUST00000136342; ENSMUSP00000125003; ENSMUSG00000028809.
GeneIDi51796.
KEGGimmu:51796.
UCSCiuc012dmz.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL627078 Genomic DNA. No translation available.
AL627185 Genomic DNA. No translation available.
RefSeqiNP_058079.2. NM_016799.3.
UniGeneiMm.1963.

3D structure databases

ProteinModelPortaliE9PUK6.
SMRiE9PUK6. Positions 27-134.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000125003.

Proteomic databases

PaxDbiE9PUK6.
PRIDEiE9PUK6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000136342; ENSMUSP00000125003; ENSMUSG00000028809.
GeneIDi51796.
KEGGimmu:51796.
UCSCiuc012dmz.1. mouse.

Organism-specific databases

CTDi10250.
MGIiMGI:1858303. Srrm1.

Phylogenomic databases

eggNOGiKOG2146. Eukaryota.
ENOG4111IMU. LUCA.
GeneTreeiENSGT00730000111080.
KOiK13171.
OMAiASAPKHK.
TreeFamiTF318972.

Enzyme and pathway databases

ReactomeiR-MMU-109688. Cleavage of Growing Transcript in the Termination Region.
R-MMU-159236. Transport of Mature mRNA derived from an Intron-Containing Transcript.
R-MMU-72163. mRNA Splicing - Major Pathway.
R-MMU-72187. mRNA 3'-end processing.

Miscellaneous databases

ChiTaRSiSrrm1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiE9PUK6.
ExpressionAtlasiE9PUK6. baseline and differential.
GenevisibleiE9PUK6. MM.

Family and domain databases

Gene3Di1.20.1390.10. 1 hit.
InterProiIPR002483. PWI_dom.
[Graphical view]
PfamiPF01480. PWI. 1 hit.
[Graphical view]
SMARTiSM00311. PWI. 1 hit.
[Graphical view]
SUPFAMiSSF101233. SSF101233. 1 hit.
PROSITEiPS51025. PWI. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  2. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. "Specific phosphopeptide enrichment with immobilized titanium ion affinity chromatography adsorbent for phosphoproteome analysis."
    Zhou H., Ye M., Dong J., Han G., Jiang X., Wu R., Zou H.
    J. Proteome Res. 7:3957-3967(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  4. "The phagosomal proteome in interferon-gamma-activated macrophages."
    Trost M., English L., Lemieux S., Courcelles M., Desjardins M., Thibault P.
    Immunity 30:143-154(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  5. "Large scale localization of protein phosphorylation by use of electron capture dissociation mass spectrometry."
    Sweet S.M., Bailey C.M., Cunningham D.L., Heath J.K., Cooper H.J.
    Mol. Cell. Proteomics 8:904-912(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  7. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  8. Ensembl
    Submitted (MAY-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.
  9. "SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways."
    Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.
    Mol. Cell 50:919-930(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiE9PUK6_MOUSE
AccessioniPrimary (citable) accession number: E9PUK6
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: June 8, 2016
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.