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E9PSK0 (E9PSK0_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length981 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000062052

Sequences

Sequence LengthMass (Da)Tools
E9PSK0 [UniParc].

Last modified April 5, 2011. Version 1.
Checksum: 1A39EB1DA40DE194

FASTA981112,271
        10         20         30         40         50         60 
MGLLRWLPLL GQLLLLWPLA ARPASPIRAF VVPHSHMDVG WVYTVQESMR AYAANVYTTV 

        70         80         90        100        110        120 
VEELVRGRQR RFIAVEQEFF RLWWDGVASE QQKQQVRQLL DEGRLEFVLG GQVMHDEAVT 

       130        140        150        160        170        180 
HLDDQILQLT EGHGFLYETF GIRPQFSWHV DPFGASATTP TLFALAGFNA HLISRIDYDL 

       190        200        210        220        230        240 
KDAMQEAQGL QFVWHGSPSL SEQQEIYTHV MDLYSYCTPS HIPFSNRSGF YWNGVAVFPE 

       250        260        270        280        290        300 
PPPDGVYPNM SEPVTVDNIH LYAEALVANV KQRAAWFRTP HVLWPWGCDK QFFNASVQFD 

       310        320        330        340        350        360 
NMDPLLEYIN NRSAQFGISV QYATLNDYFQ ALHDFNVTWD IRDHHDFLPY SSEPQQAWTG 

       370        380        390        400        410        420 
FFTSRSTLKG LARQASALLY AGESMFTRYM WPHPRGTLDP TWALQQLQQL RWAVSEVQHH 

       430        440        450        460        470        480 
DAITGTESPK VKNMYMEHLS MGMRGVHKLM ASIALDRPPG SGTDTRPVGY SASVYNPLAW 

       490        500        510        520        530        540 
KITTIITLTV AFPSVSVTDE LGRPVSAQIQ NSTKDPSAYD LLILTTIPGL SYRHYKVRRT 

       550        560        570        580        590        600 
RGDQAGTREL VTPRANTLKF SRKLRNQTSQ EGKLLVPVMN DCYTLLFDQD TNMLHSIQDR 

       610        620        630        640        650        660 
QSNRTVHMTQ EFLEYRANGD VKQGPISDNY LFASNDTAEP SWEAVGMEMV VGTLATDVRQ 

       670        680        690        700        710        720 
YFYRNITDQG YIYSIHTRLA HVHPSLAGEL LCRRIEQQYQ VGPLDLNREA ILRTSSDLNS 

       730        740        750        760        770        780 
QQVLYSDNNG YQMQRRPYKA FKSNPIPRNY YPMVQSAFIE DDKSRLVLLA ERPHGVSSQE 

       790        800        810        820        830        840 
NGQVEVMLHR RLWNNLVWDL NYNLTLNDTS VVHPVLWLLL GPKSTTTALR PRSGVALQHR 

       850        860        870        880        890        900 
PVVLLKELTD EEETAIHRPH HPWPVTLPPS LHLQVLSLPG WQYSRNHAQH LKNLQRGHPE 

       910        920        930        940        950        960 
KPQVNLQRVL LRLHHLYEAG EDPVLSRPAT VDLKIALRGL GSVVAVEERS LTGTWDVQTL 

       970        980 
QRWHWRTKIG QLKGDPWISL P

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000062052.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000062052.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06080329 Genomic DNA. No translation available.
IPIIPI00949448.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000064548; ENSRNOP00000062052; ENSRNOG00000005526.

Organism-specific databases

RGD1308840. Man2b2.

Phylogenomic databases

GeneTreeENSGT00510000046304.

Gene expression databases

ArrayExpressE9PSK0.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.110.10. 1 hit.
InterProIPR011013. Gal_mutarotase_SF_dom.
IPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR013780. Glyco_hydro_13_b.
IPR027291. Glyco_hydro_38/57_N.
IPR011682. Glyco_hydro_38_C.
IPR015341. Glyco_hydro_38_cen_dom.
IPR000602. Glyco_hydro_38_N.
[Graphical view]
PfamPF09261. Alpha-mann_mid. 1 hit.
PF01074. Glyco_hydro_38. 1 hit.
PF07748. Glyco_hydro_38C. 1 hit.
[Graphical view]
SMARTSM00872. Alpha-mann_mid. 1 hit.
[Graphical view]
SUPFAMSSF74650. Gal_mut_like. 1 hit.
SSF88713. Glyco_hydro/deAcase_b/a-brl. 1 hit.
ProtoNetSearch...

Other

NextBio35574766.

Entry information

Entry nameE9PSK0_RAT
AccessionPrimary (citable) accession number: E9PSK0
Entry history
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: May 1, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info