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Protein

Syndecan

Gene

SDC2

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Cell surface proteoglycan.UniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
SyndecanUniRule annotation
Gene namesi
Name:SDC2Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 8

Organism-specific databases

EuPathDBiHostDB:ENSG00000169439.11
HGNCiHGNC:10659 SDC2

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei116 – 140HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000169439

PTM / Processingi

Keywords - PTMi

Glycoprotein, Heparan sulfateUniRule annotation, Proteoglycan

Proteomic databases

MaxQBiE9PBI9

Expressioni

Gene expression databases

BgeeiENSG00000169439

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini139 – 1574.1mInterPro annotationAdd BLAST19

Sequence similaritiesi

Belongs to the syndecan proteoglycan family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiENOG410IW5I Eukaryota
ENOG4111QSA LUCA
GeneTreeiENSGT00530000063116

Family and domain databases

InterProiView protein in InterPro
IPR003585 Neurexin-like
IPR001050 Syndecan
IPR031201 Syndecan-2
IPR027789 Syndecan/Neurexin_dom
IPR030479 Syndecan_CS
PANTHERiPTHR10915 PTHR10915, 1 hit
PTHR10915:SF6 PTHR10915:SF6, 1 hit
PfamiView protein in Pfam
PF01034 Syndecan, 1 hit
SMARTiView protein in SMART
SM00294 4.1m, 1 hit
PROSITEiView protein in PROSITE
PS00964 SYNDECAN, 1 hit

Sequencei

Sequence statusi: Complete.

E9PBI9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYLDNSSIEE ASGVYPIDDD DYASASGSGA DEDVESPELT TSRPLPKILL
60 70 80 90 100
TSAAPKVETT TLNIQNKIPA QTKSPEETDK EKVHLSDSER KMDPAEEDTN
110 120 130 140 150
VYTEKHSDSL FKRTEVLAAV IAGGVIGFLF AIFLILLLVY RMRKKDEGSY
160 170
DLGERKPSSA AYQKAPTKEF YA
Length:172
Mass (Da):18,972
Last modified:April 5, 2011 - v1
Checksum:i616D44AC7977D6A2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003477 Genomic DNA No translation available.
AP003548 Genomic DNA No translation available.
KC877279 Genomic DNA No translation available.
RefSeqiXP_011515514.1, XM_011517212.2
UniGeneiHs.1501
Hs.598247

Genome annotation databases

EnsembliENST00000519914; ENSP00000428256; ENSG00000169439
ENST00000522911; ENSP00000427784; ENSG00000169439
GeneIDi6383
UCSCiuc011lgu.2 human

Similar proteinsi

Entry informationi

Entry nameiE9PBI9_HUMAN
AccessioniPrimary (citable) accession number: E9PBI9
Entry historyiIntegrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: June 20, 2018
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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