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E9PBI9

- E9PBI9_HUMAN

UniProt

E9PBI9 - E9PBI9_HUMAN

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Protein

Syndecan

Gene

SDC2

Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Cell surface proteoglycan.UniRule annotation

GO - Biological processi

  1. dendrite morphogenesis Source: Ensembl
  2. regulation of dendrite morphogenesis Source: Ensembl
  3. response to caffeine Source: Ensembl
  4. response to hypoxia Source: Ensembl
  5. wound healing Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
SyndecanUniRule annotation
Gene namesi
Name:SDC2Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 8

Organism-specific databases

HGNCiHGNC:10659. SDC2.

Subcellular locationi

Membrane UniRule annotation; Single-pass type I membrane protein UniRule annotation

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. neuronal cell body Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Keywords - PTMi

Glycoprotein, Heparan sulfateUniRule annotation, Proteoglycan

Expressioni

Gene expression databases

ExpressionAtlasiE9PBI9. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliE9PBI9.
SMRiE9PBI9. Positions 141-172.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the syndecan proteoglycan family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00530000063116.
KOiK16336.

Family and domain databases

InterProiIPR003585. Neurexin-like.
IPR001050. Syndecan.
IPR027789. Syndecan/Neurexin_dom.
[Graphical view]
PANTHERiPTHR10915. PTHR10915. 1 hit.
PfamiPF01034. Syndecan. 1 hit.
[Graphical view]
SMARTiSM00294. 4.1m. 1 hit.
[Graphical view]
PROSITEiPS00964. SYNDECAN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E9PBI9 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MYLDNSSIEE ASGVYPIDDD DYASASGSGA DEDVESPELT TSRPLPKILL
60 70 80 90 100
TSAAPKVETT TLNIQNKIPA QTKSPEETDK EKVHLSDSER KMDPAEEDTN
110 120 130 140 150
VYTEKHSDSL FKRTEVLAAV IAGGVIGFLF AIFLILLLVY RMRKKDEGSY
160 170
DLGERKPSSA AYQKAPTKEF YA
Length:172
Mass (Da):18,972
Last modified:April 5, 2011 - v1
Checksum:i616D44AC7977D6A2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP003477 Genomic DNA. No translation available.
AP003548 Genomic DNA. No translation available.
KC877279 Genomic DNA. No translation available.
RefSeqiXP_005251077.1. XM_005251020.2.
XP_006716677.1. XM_006716614.1.
UniGeneiHs.1501.
Hs.598247.

Genome annotation databases

EnsembliENST00000519914; ENSP00000428256; ENSG00000169439.
ENST00000522911; ENSP00000427784; ENSG00000169439.
GeneIDi6383.
KEGGihsa:6383.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP003477 Genomic DNA. No translation available.
AP003548 Genomic DNA. No translation available.
KC877279 Genomic DNA. No translation available.
RefSeqi XP_005251077.1. XM_005251020.2.
XP_006716677.1. XM_006716614.1.
UniGenei Hs.1501.
Hs.598247.

3D structure databases

ProteinModelPortali E9PBI9.
SMRi E9PBI9. Positions 141-172.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000519914 ; ENSP00000428256 ; ENSG00000169439 .
ENST00000522911 ; ENSP00000427784 ; ENSG00000169439 .
GeneIDi 6383.
KEGGi hsa:6383.

Organism-specific databases

CTDi 6383.
HGNCi HGNC:10659. SDC2.
GenAtlasi Search...

Phylogenomic databases

GeneTreei ENSGT00530000063116.
KOi K16336.

Miscellaneous databases

GenomeRNAii 6383.
NextBioi 35501421.

Gene expression databases

ExpressionAtlasi E9PBI9. baseline and differential.

Family and domain databases

InterProi IPR003585. Neurexin-like.
IPR001050. Syndecan.
IPR027789. Syndecan/Neurexin_dom.
[Graphical view ]
PANTHERi PTHR10915. PTHR10915. 1 hit.
Pfami PF01034. Syndecan. 1 hit.
[Graphical view ]
SMARTi SM00294. 4.1m. 1 hit.
[Graphical view ]
PROSITEi PS00964. SYNDECAN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "DNA sequence and analysis of human chromosome 8."
    Nusbaum C., Mikkelsen T.S., Zody M.C., Asakawa S., Taudien S., Garber M., Kodira C.D., Schueler M.G., Shimizu A., Whittaker C.A., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Yang X., Allen N.R., Anderson S., Asakawa T.
    , Blechschmidt K., Bloom T., Borowsky M.L., Butler J., Cook A., Corum B., DeArellano K., DeCaprio D., Dooley K.T., Dorris L. III, Engels R., Glockner G., Hafez N., Hagopian D.S., Hall J.L., Ishikawa S.K., Jaffe D.B., Kamat A., Kudoh J., Lehmann R., Lokitsang T., Macdonald P., Major J.E., Matthews C.D., Mauceli E., Menzel U., Mihalev A.H., Minoshima S., Murayama Y., Naylor J.W., Nicol R., Nguyen C., O'Leary S.B., O'Neill K., Parker S.C., Polley A., Raymond C.K., Reichwald K., Rodriguez J., Sasaki T., Schilhabel M., Siddiqui R., Smith C.L., Sneddon T.P., Talamas J.A., Tenzin P., Topham K., Venkataraman V., Wen G., Yamazaki S., Young S.K., Zeng Q., Zimmer A.R., Rosenthal A., Birren B.W., Platzer M., Shimizu N., Lander E.S.
    Nature 439:331-335(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  3. "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation."
    Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.
    Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
  5. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiE9PBI9_HUMAN
AccessioniPrimary (citable) accession number: E9PBI9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: October 29, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3