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Protein
Submitted name:

THO complex subunit 4

Gene

ALYREF

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
THO complex subunit 4Imported
Gene namesi
Name:ALYREFImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 17

Organism-specific databases

HGNCiHGNC:19071. ALYREF.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiE9PB61.
MaxQBiE9PB61.
PaxDbiE9PB61.
PeptideAtlasiE9PB61.
PRIDEiE9PB61.

Expressioni

Gene expression databases

BgeeiENSG00000183684.
GenevisibleiE9PB61. HS.

Interactioni

Protein-protein interaction databases

IntActiE9PB61. 6 interactions.
STRINGi9606.ENSP00000421592.

Structurei

3D structure databases

ProteinModelPortaliE9PB61.
SMRiE9PB61. Positions 8-195.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini113 – 19078RRM (RNA recognition motif)InterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili240 – 26425Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0533. Eukaryota.
ENOG4111JAW. LUCA.
GeneTreeiENSGT00410000025615.
KOiK12881.
OMAiWQNDVFA.
OrthoDBiEOG091G0T4Z.
PhylomeDBiE9PB61.
TreeFamiTF313312.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR025715. FoP_C.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF13865. FoP_duplication. 1 hit.
PF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM01218. FoP_duplication. 1 hit.
SM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E9PB61-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPDSAPAMAD KMDMSLDDII KLNRSQRGGR GGGRGRGRAG SQGGRGGGAQ
60 70 80 90 100
AAARVNRGGG PIRNRPAIAR GAAGGGGRNR PAPYSRPKQL PDKWQHDLFD
110 120 130 140 150
SGFGGGAGVE TGGKLLVSNL DFGVSDADIQ ELFAEFGTLK KAAVHYDRSG
160 170 180 190 200
RSLGTADVHF ERKADALKAM KQYNGVPLDG RPMNIQLVTS QIDAQRRPAQ
210 220 230 240 250
SVNRGGMTRN RGAGGFGGGG GTRRGTRGGA RGRGRGAGRN SKQQLSAEEL
260
DAQLDAYNAR MDTS
Length:264
Mass (Da):27,558
Last modified:April 5, 2011 - v1
Checksum:i52BEF28686C9EB04
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC145207 Genomic DNA. No translation available.
RefSeqiNP_005773.3. NM_005782.3.
UniGeneiHs.534385.

Genome annotation databases

EnsembliENST00000505490; ENSP00000421592; ENSG00000183684.
GeneIDi10189.
KEGGihsa:10189.
UCSCiuc002kbu.3. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC145207 Genomic DNA. No translation available.
RefSeqiNP_005773.3. NM_005782.3.
UniGeneiHs.534385.

3D structure databases

ProteinModelPortaliE9PB61.
SMRiE9PB61. Positions 8-195.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiE9PB61. 6 interactions.
STRINGi9606.ENSP00000421592.

Proteomic databases

EPDiE9PB61.
MaxQBiE9PB61.
PaxDbiE9PB61.
PeptideAtlasiE9PB61.
PRIDEiE9PB61.

Protocols and materials databases

DNASUi10189.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000505490; ENSP00000421592; ENSG00000183684.
GeneIDi10189.
KEGGihsa:10189.
UCSCiuc002kbu.3. human.

Organism-specific databases

CTDi10189.
HGNCiHGNC:19071. ALYREF.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0533. Eukaryota.
ENOG4111JAW. LUCA.
GeneTreeiENSGT00410000025615.
KOiK12881.
OMAiWQNDVFA.
OrthoDBiEOG091G0T4Z.
PhylomeDBiE9PB61.
TreeFamiTF313312.

Miscellaneous databases

ChiTaRSiALYREF. human.
GenomeRNAii10189.

Gene expression databases

BgeeiENSG00000183684.
GenevisibleiE9PB61. HS.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR025715. FoP_C.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF13865. FoP_duplication. 1 hit.
PF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM01218. FoP_duplication. 1 hit.
SM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiE9PB61_HUMAN
AccessioniPrimary (citable) accession number: E9PB61
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: September 7, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.