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Protein
Submitted name:

Putative uncharacterized protein

Gene

DAPPUDRAFT_304871

Organism
Daphnia pulex (Water flea)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
ORF Names:DAPPUDRAFT_304871Imported
OrganismiDaphnia pulex (Water flea)Imported
Taxonomic identifieri6669 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaCrustaceaBranchiopodaDiplostracaCladoceraAnomopodaDaphniidaeDaphnia
ProteomesiUP000000305 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi6669.DappuP304871.

Structurei

3D structure databases

ProteinModelPortaliE9GME3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiE9GME3.
OMAiFDRPTAN.
PhylomeDBiE9GME3.

Family and domain databases

Gene3Di1.10.275.10. 1 hit.
HAMAPiMF_00006. Arg_succ_lyase.
InterProiIPR029419. Arg_succ_lyase_C.
IPR009049. Argininosuccinate_lyase.
IPR024083. Fumarase/histidase_N.
IPR020557. Fumarate_lyase_CS.
IPR000362. Fumarate_lyase_fam.
IPR022761. Fumarate_lyase_N.
IPR008948. L-Aspartase-like.
[Graphical view]
PANTHERiPTHR11444. PTHR11444. 1 hit.
PTHR11444:SF3. PTHR11444:SF3. 1 hit.
PfamiPF14698. ASL_C2. 1 hit.
PF00206. Lyase_1. 1 hit.
[Graphical view]
PRINTSiPR00149. FUMRATELYASE.
SUPFAMiSSF48557. SSF48557. 1 hit.
TIGRFAMsiTIGR00838. argH. 1 hit.
PROSITEiPS00163. FUMARATE_LYASES. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E9GME3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEESGGKLWG GRFSDRRVDQ VMERFNSSIS YDKRLCYVDI LGSKAYAAGL
60 70 80 90 100
FKAGLVDQLE CADICNALSA IEDEWRNETF EILPSDEDIH SANERRLKEM
110 120 130 140 150
IGMAGGKLHT GRSRNDQVAT DLRLWLRQEI DQSLDKFLVQ IIQILIERAQ
160 170 180 190 200
DEMDILLPGY THLQRAQPIR WSHYLCSYAW SLWSDVQRLI QLRDRVNVMP
210 220 230 240 250
LGSGALAGSP FPIDRLYLSD LLGFDNITPN SLLGVGDRDF VVEFLSWASI
260 270 280 290 300
LSSHLSRLAE DLIIYSTKEF NFVTIADAYS TGSSLMPQKR NPDGLELIRA
310 320 330 340 350
KAGRIFGHMA GFSMVLKGLP STYNKDLQED KEALFDVVDN LYVSLQVAAG
360 370 380 390 400
ILSTLKITAE RAMGALSSDM LATDLAYHLV RRGVAFREAH AIVGKVVSMA
410 420 430 440 450
EDQQKEMSDL TLEELQTVSS AFDSSVASIW NYEHSVEQYQ VAGGTSRRAV
460 470
QKQIDDLKAL LELRNIPTAS STAL
Length:474
Mass (Da):53,017
Last modified:April 5, 2011 - v1
Checksum:iB15B2522AAA66799
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL732552 Genomic DNA. Translation: EFX79352.1.

Genome annotation databases

EnsemblMetazoaiEFX79352; EFX79352; DAPPUDRAFT_304871.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL732552 Genomic DNA. Translation: EFX79352.1.

3D structure databases

ProteinModelPortaliE9GME3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6669.DappuP304871.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiEFX79352; EFX79352; DAPPUDRAFT_304871.

Phylogenomic databases

InParanoidiE9GME3.
OMAiFDRPTAN.
PhylomeDBiE9GME3.

Family and domain databases

Gene3Di1.10.275.10. 1 hit.
HAMAPiMF_00006. Arg_succ_lyase.
InterProiIPR029419. Arg_succ_lyase_C.
IPR009049. Argininosuccinate_lyase.
IPR024083. Fumarase/histidase_N.
IPR020557. Fumarate_lyase_CS.
IPR000362. Fumarate_lyase_fam.
IPR022761. Fumarate_lyase_N.
IPR008948. L-Aspartase-like.
[Graphical view]
PANTHERiPTHR11444. PTHR11444. 1 hit.
PTHR11444:SF3. PTHR11444:SF3. 1 hit.
PfamiPF14698. ASL_C2. 1 hit.
PF00206. Lyase_1. 1 hit.
[Graphical view]
PRINTSiPR00149. FUMRATELYASE.
SUPFAMiSSF48557. SSF48557. 1 hit.
TIGRFAMsiTIGR00838. argH. 1 hit.
PROSITEiPS00163. FUMARATE_LYASES. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The ecoresponsive genome of Daphnia pulex."
    Colbourne J.K., Pfrender M.E., Gilbert D., Thomas W.K., Tucker A., Oakley T.H., Tokishita S., Aerts A., Arnold G.J., Basu M.K., Bauer D.J., Caceres C.E., Carmel L., Casola C., Choi J.H., Detter J.C., Dong Q., Dusheyko S.
    , Eads B.D., Frohlich T., Geiler-Samerotte K.A., Gerlach D., Hatcher P., Jogdeo S., Krijgsveld J., Kriventseva E.V., Kultz D., Laforsch C., Lindquist E., Lopez J., Manak J.R., Muller J., Pangilinan J., Patwardhan R.P., Pitluck S., Pritham E.J., Rechtsteiner A., Rho M., Rogozin I.B., Sakarya O., Salamov A., Schaack S., Shapiro H., Shiga Y., Skalitzky C., Smith Z., Souvorov A., Sung W., Tang Z., Tsuchiya D., Tu H., Vos H., Wang M., Wolf Y.I., Yamagata H., Yamada T., Ye Y., Shaw J.R., Andrews J., Crease T.J., Tang H., Lucas S.M., Robertson H.M., Bork P., Koonin E.V., Zdobnov E.M., Grigoriev I.V., Lynch M., Boore J.L.
    Science 331:555-561(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiE9GME3_DAPPU
AccessioniPrimary (citable) accession number: E9GME3
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: July 22, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.