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Protein
Submitted name:

ATP dependent DNA ligase

Gene

BC1001_3648

Organism
Burkholderia sp. CCGE1001
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSP640510:GI28-3716-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
ORF Names:BC1001_3648Imported
OrganismiBurkholderia sp. CCGE1001Imported
Taxonomic identifieri640510 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderia
ProteomesiUP000007095: Chromosome 2

Structurei

3D structure databases

ProteinModelPortaliE8YQJ6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E8YQJ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRFAALYAA LDATTSTHDK LEALTSYFSV ADPEDAAWAS YFLAGGKPRQ
60 70 80 90 100
SVPTRLLTEF ARERAGLPAW LFEESYHAVG DLAETIAHIL PPAQRTSELG
110 120 130 140 150
LTQWIEQRVL TLRGLAPEAL RTRLFSYWDE LDWSGRFLLT KLIGGGFRVG
160 170 180 190 200
VARQLVVRAL AEVAGVDHKR IAQRMVGWTD SRQKPDAARY LRLIAPDVSE
210 220 230 240 250
AAARDGADGA DGAQPARERH DSDLGLPYPF FLAHPLQADP QTLGDPSRWL
260 270 280 290 300
IEWKWDGIRA QLVKRAGRVW LWSRGEDLIT DRFPEVVALG EALPDGFVID
310 320 330 340 350
GEILAWEPGG AMPLPFARLQ PRIARKTLSK KILADSPAAL LAYDLLEAHG
360 370 380 390 400
EDLRMTPLAD RRARLDTLAA SLGDSLAGDL LRVSPLVCGT DWQALAALRE
410 420 430 440 450
ESRARGVEGL MLKERESLYG VGRTKASGTW WKWKIDPYAV DAVLVYAQRG
460 470 480 490 500
HGRRASLYTD FTFAVWDEAN GVRTLVPFAK AYSGLTDEEM RQVDAIVRKT
510 520 530 540 550
TIEKFGPVRS VTPTLVFEIG FEGIQASTRH KSGVAVRFPR MLRWRTDKHI
560
DDADTLAMLK GFIDDRAA
Length:568
Mass (Da):63,178
Last modified:April 5, 2011 - v1
Checksum:i726DC2990C6D2114
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002520 Genomic DNA. Translation: ADX57061.1.
RefSeqiWP_013590171.1. NC_015137.1.
YP_004230121.1. NC_015137.1.

Genome annotation databases

EnsemblBacteriaiADX57061; ADX57061; BC1001_3648.
GeneIDi10225239.
KEGGibug:BC1001_3648.
PATRICi46900278. VBIBurSp1058_3818.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002520 Genomic DNA. Translation: ADX57061.1.
RefSeqiWP_013590171.1. NC_015137.1.
YP_004230121.1. NC_015137.1.

3D structure databases

ProteinModelPortaliE8YQJ6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADX57061; ADX57061; BC1001_3648.
GeneIDi10225239.
KEGGibug:BC1001_3648.
PATRICi46900278. VBIBurSp1058_3818.

Phylogenomic databases

KOiK10747.

Enzyme and pathway databases

BioCyciBSP640510:GI28-3716-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CCGE1001Imported.

Entry informationi

Entry nameiE8YQJ6_9BURK
AccessioniPrimary (citable) accession number: E8YQJ6
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: March 4, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.