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E8YB68

- E8YB68_ECOKO

UniProt

E8YB68 - E8YB68_ECOKO

Protein
Submitted name:

Alpha amylase catalytic region

Gene

malS

Organism
Escherichia coli (strain ATCC 55124 / KO11)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (05 Apr 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: InterPro
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. alpha-glucan catabolic process Source: InterPro
    2. cellular oligosaccharide catabolic process Source: InterPro

    Enzyme and pathway databases

    BioCyciECOL595495:GI1Q-156-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha amylase catalytic regionImported
    Submitted name:
    Alpha-amylaseImported
    Gene namesi
    Name:malSImported
    Ordered Locus Names:EKO11_0155Imported
    ORF Names:KO11_04865Imported
    OrganismiEscherichia coli (strain ATCC 55124 / KO11)Imported
    Taxonomic identifieri595495 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000002250: Chromosome, UP000010089: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 1818 PotentialImportedAdd
    BLAST
    Chaini19 – 676658 PotentialImportedPRO_5000704281Add
    BLAST

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    KOiK01176.
    OMAiGQNWHSF.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    E8YB68-1 [UniParc]FASTAAdd to Basket

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    MKLAACFLTL LPGFAVAASW TSPGFPAFSE QGTGTFVSHA QLPKGTRPLT    50
    LNFDQQCWQP ADAIKLNQML SLQPCSNTPP QWRLFRDGKY TLQIDTRSGT 100
    PTLMISIQNA AEPVANLVRE CPKWDGLPLT LDVSATFPEG AAVRDYYSQQ 150
    IAIVKNGQIT LQPAATSNGL LLLERAETDA PAPFDWHNAT VYFVLTDRFE 200
    NGDPSNDQSY GRHKDGMAEI GTFHGGDLRG LTNKLDYLQQ LGVNALWISA 250
    PFEQIHGWVG GGTKGDFPHY AYHGYYTQDW TNLDANMGNE ADLRTLVDSA 300
    HQRGIRILFD VVMNHTGYAT LADMQEYQFG ALYLSGDEVK KTLGERWSDW 350
    KPAAGQTWHS FNDYINFSDK TGWDKWWGKN WIRTDIGDYD NPGFDDLTMS 400
    LAFLPDIKTE STTASGLPVF YKNKTDTHAK VIEGFTPRDY LTHWLSQWVR 450
    DYGIDGFRVD TAKHVELPAW QQLKTEASAA LREWKKANPD KALDDKPFWM 500
    TGEAWGHGVM QSDYYRHGFD AMINFDYQEQ AAKAVDCLAQ MDTTWQQMAE 550
    KLQGFNVLSY LSSHDTRLFR EGGDKAAELL LLAPGAVQIF YGDESSRPFG 600
    PTGSDPLQGT RSDMNWQDVS GKSAANVAHW QKISQFRARH PAIGAGKQTT 650
    LSLKQGYGFV REHGDDKVLV IWAGQQ 676
    Length:676
    Mass (Da):75,728
    Last modified:April 5, 2011 - v1
    Checksum:i11B2B56ABF214C3E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002516 Genomic DNA. Translation: ADX48819.1.
    CP002970 Genomic DNA. Translation: AFH15959.1.
    RefSeqiYP_005275883.1. NC_016902.1.
    YP_006163311.1. NC_017660.1.

    Genome annotation databases

    EnsemblBacteriaiADX48819; ADX48819; EKO11_0155.
    AFH15959; AFH15959; KO11_04865.
    GeneIDi11775199.
    12761155.
    KEGGiekf:KO11_04865.
    eko:EKO11_0155.
    PATRICi48640089. VBIEscCol13896_0154.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002516 Genomic DNA. Translation: ADX48819.1 .
    CP002970 Genomic DNA. Translation: AFH15959.1 .
    RefSeqi YP_005275883.1. NC_016902.1.
    YP_006163311.1. NC_017660.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADX48819 ; ADX48819 ; EKO11_0155 .
    AFH15959 ; AFH15959 ; KO11_04865 .
    GeneIDi 11775199.
    12761155.
    KEGGi ekf:KO11_04865.
    eko:EKO11_0155.
    PATRICi 48640089. VBIEscCol13896_0154.

    Phylogenomic databases

    KOi K01176.
    OMAi GQNWHSF.

    Enzyme and pathway databases

    BioCyci ECOL595495:GI1Q-156-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Escherichia coli KO11."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Munk A.C., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Keating D., Landick R., Woyke T.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 55124 / KO11Imported and KO11Imported.
    2. "Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes."
      Turner P.C., Yomano L.P., Jarboe L.R., York S.W., Baggett C.L., Moritz B.E., Zentz E.B., Shanmugam K.T., Ingram L.O.
      J. Ind. Microbiol. Biotechnol. 39:629-639(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: KO11FLImported.

    Entry informationi

    Entry nameiE8YB68_ECOKO
    AccessioniPrimary (citable) accession number: E8YB68
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 5, 2011
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3