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E8Y371 (E8Y371_ECOKO) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
30S ribosomal protein S15 RuleBase RU003920 HAMAP-Rule MF_01343
Gene names
Name:rpsO HAMAP-Rule MF_01343 EMBL AFH16350.1
Ordered Locus Names:EKO11_0551 EMBL ADX49207.1
ORF Names:KO11_06840 EMBL AFH16350.1
OrganismEscherichia coli (strain ATCC 55124 / KO11) [Complete proteome] [HAMAP] EMBL ADX49207.1
Taxonomic identifier595495 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length89 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome By similarity. HAMAP-Rule MF_01343

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA By similarity. RuleBase RU004524 HAMAP-Rule MF_01343

Subunit structure

Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA By similarity. HAMAP-Rule MF_01343

Sequence similarities

Belongs to the ribosomal protein S15P family. RuleBase RU003919 HAMAP-Rule MF_01343

Sequences

Sequence LengthMass (Da)Tools
E8Y371 [UniParc].

Last modified April 5, 2011. Version 1.
Checksum: AABDDA6674B99B1C

FASTA8910,269
        10         20         30         40         50         60 
MSLSTEATAK IVSEFGRDAN DTGSTEVQVA LLTAQINHLQ GHFAEHKKDH HSRRGLLRMV 

        70         80 
SQRRKLLDYL KRKDVARYTQ LIERLGLRR 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of chromosome of Escherichia coli KO11."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Munk A.C., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Keating D., Landick R., Woyke T.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 55124 / KO11 and KO11 EMBL ADX49207.1.
[2]"Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes."
Turner P.C., Yomano L.P., Jarboe L.R., York S.W., Baggett C.L., Moritz B.E., Zentz E.B., Shanmugam K.T., Ingram L.O.
J. Ind. Microbiol. Biotechnol. 39:629-639(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KO11FL EMBL AFH16350.1.
[3]"A compact viral processing proteinase/ubiquitin hydrolase from the OTU family."
Lombardi C., Ayach M., Beaurepaire L., Chenon M., Andreani J., Guerois R., Jupin I., Bressanelli S.
PLoS Pathog. 9:e1003560-e1003560(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 2-89.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002516 Genomic DNA. Translation: ADX49207.1.
CP002970 Genomic DNA. Translation: AFH16350.1.
RefSeqYP_005276271.1. NC_016902.1.
YP_006163702.1. NC_017660.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4A5UX-ray2.00B2-89[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADX49207; ADX49207; EKO11_0551.
AFH16350; AFH16350; KO11_06840.
GeneID11775554.
12761802.
KEGGekf:KO11_06840.
eko:EKO11_0551.
PATRIC48640924. VBIEscCol13896_0557.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK02956.
OMANKQDHHS.

Enzyme and pathway databases

BioCycECOL595495:GI1Q-562-MONOMER.

Family and domain databases

Gene3D1.10.287.10. 1 hit.
HAMAPMF_01343_B. Ribosomal_S15_B.
InterProIPR000589. Ribosomal_S15.
IPR005290. Ribosomal_S15_bac-type.
IPR009068. S15_NS1_RNA-bd.
[Graphical view]
PfamPF00312. Ribosomal_S15. 1 hit.
[Graphical view]
SUPFAMSSF47060. SSF47060. 1 hit.
TIGRFAMsTIGR00952. S15_bact. 1 hit.
PROSITEPS00362. RIBOSOMAL_S15. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE8Y371_ECOKO
AccessionPrimary (citable) accession number: E8Y371
Entry history
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: May 14, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)