E8Y371 (E8Y371_ECOKO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S15 RuleBase RU003920 HAMAP-Rule MF_01343

Gene names

Name:	rpsO HAMAP-Rule MF_01343 EMBL AFH16350.1
Ordered Locus Names:	EKO11_0551 EMBL ADX49207.1
ORF Names:	KO11_06840 EMBL AFH16350.1

Organism

Escherichia coli (strain ATCC 55124 / KO11) [Complete proteome] [HAMAP] EMBL ADX49207.1

Taxonomic identifier

595495 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	89 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome By similarity. HAMAP-Rule MF_01343 One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA By similarity. RuleBase RU004524 HAMAP-Rule MF_01343
Subunit structure	Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA By similarity. HAMAP-Rule MF_01343
Sequence similarities	Belongs to the ribosomal protein S15P family. RuleBase RU003919 HAMAP-Rule MF_01343

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding RuleBase RU004524 HAMAP-Rule MF_01343
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003919 HAMAP-Rule MF_01343 EMBL ADX49207.1
Technical term	3D-structure PDB 4A5U Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E8Y371 [UniParc]. Last modified April 5, 2011. Version 1. Checksum: AABDDA6674B99B1C	FASTA	89	10,269
	10 20 30 40 50 60 MSLSTEATAK IVSEFGRDAN DTGSTEVQVA LLTAQINHLQ GHFAEHKKDH HSRRGLLRMV 70 80 SQRRKLLDYL KRKDVARYTQ LIERLGLRR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of chromosome of Escherichia coli KO11." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Munk A.C., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Keating D., Landick R., Woyke T. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 55124 / KO11 and KO11 EMBL ADX49207.1.
[2]	"Crystal Structure of a Viral Multifunctional Proteinase-Ubiquitin Hydrolase in Polyprotein Processing Mode." Robin C., Beaurepaire L., Chenon M., Jupin I., Bressanelli S. Submitted (OCT-2011) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 2-89.
[3]	"Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes." Turner P.C., Yomano L.P., Jarboe L.R., York S.W., Baggett C.L., Moritz B.E., Zentz E.B., Shanmugam K.T., Ingram L.O. J. Ind. Microbiol. Biotechnol. 39:629-639(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: KO11FL EMBL AFH16350.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP002516 Genomic DNA. Translation: ADX49207.1.
CP002970 Genomic DNA. Translation: AFH16350.1.

RefSeq

YP_005276271.1. NC_016902.1.
YP_006163702.1. NC_017660.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4A5U	X-ray	2.00	B	2-89	[»]

SMR

E8Y371. Positions 3-88.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

ADX49207; ADX49207; EKO11_0551.
AFH16350; AFH16350; KO11_06840.

GeneID

11775554.
12761802.

KEGG

ekf:KO11_06840.
eko:EKO11_0551.

PATRIC

48640924. VBIEscCol13896_0557.

Organism-specific databases

CMR

Search...

Phylogenomic databases

KO

K02956.

Family and domain databases

Gene3D

1.10.287.10. 1 hit.

HAMAP

MF_01343_B. Ribosomal_S15_S13e_B.

InterPro

IPR000589. Ribosomal_S15.
IPR005290. Ribosomal_S15_bac-type.
IPR009068. S15_NS1_RNA-bd.
[Graphical view]

PANTHER

PTHR23321:SF10. PTHR23321:SF10. 1 hit.

Pfam

PF00312. Ribosomal_S15. 1 hit.
[Graphical view]

SUPFAM

SSF47060. S15/NS1_bind. 1 hit.

TIGRFAMs

TIGR00952. S15_bact. 1 hit.

PROSITE

PS00362. RIBOSOMAL_S15. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

E8Y371_ECOKO

Accession

Primary (citable) accession number: E8Y371

Entry history

Integrated into UniProtKB/TrEMBL:	April 5, 2011
Last sequence update:	April 5, 2011
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)