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Protein

Xylose isomerase

Gene

Rahaq_0985

Organism
Rahnella sp. (strain Y9602)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. xylose isomerase activity Source: UniProtKB-EC

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-KW
  2. pentose-phosphate shunt Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotation

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

Keywords - Ligandi

Metal-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciRSP741091:GHHP-1021-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotationSAAS annotation (EC:5.3.1.5UniRule annotationSAAS annotation)
Gene namesi
Ordered Locus Names:Rahaq_0985Imported
OrganismiRahnella sp. (strain Y9602)Imported
Taxonomic identifieri741091 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeRahnella
ProteomesiUP000007257 Componenti: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliE8XPG8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000224339.
KOiK01805.
OMAiFDTFPDA.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMiSSF51658. SSF51658. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E8XPG8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSELKFATRL NSFASGAHLY WPEQKGKPSV LQMIERAATV KGLTHLDLNY
60 70 80 90 100
PQHMTGDITL MRQKIEEVGL AVNGMQMRWD APEFKIGAFT HPDPKIRRQA
110 120 130 140 150
IELTKRGIDA GREFGASIMT LWMGQDGFDY CFQADYKKIW EDAVSAVREV
160 170 180 190 200
AEYAPDIDVS IEYKPNEPRA YSIFPNATTC LLAVEEAGCK NLGITLDFAH
210 220 230 240 250
VLFANEVPAF AAAMVARRSR LLGLDLNDGW GKRDDGLMVG SVNPRATLEF
260 270 280 290 300
LLQMKRDGYK GAYYFDTFPD ASGLDPVREA ETNIATVIRL LKLCEKLENN
310 320
PALNEAISRQ DAVATQQIVN DVMLAQ
Length:326
Mass (Da):36,416
Last modified:April 4, 2011 - v1
Checksum:iCB5409DFA5190970
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002505 Genomic DNA. Translation: ADW72609.1.
RefSeqiWP_013574314.1. NC_015061.1.
YP_004211736.1. NC_015061.1.

Genome annotation databases

EnsemblBacteriaiADW72609; ADW72609; Rahaq_0985.
KEGGirah:Rahaq_0985.
PATRICi47400140. VBIRahSp167412_0982.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002505 Genomic DNA. Translation: ADW72609.1.
RefSeqiWP_013574314.1. NC_015061.1.
YP_004211736.1. NC_015061.1.

3D structure databases

ProteinModelPortaliE8XPG8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADW72609; ADW72609; Rahaq_0985.
KEGGirah:Rahaq_0985.
PATRICi47400140. VBIRahSp167412_0982.

Phylogenomic databases

HOGENOMiHOG000224339.
KOiK01805.
OMAiFDTFPDA.

Enzyme and pathway databases

BioCyciRSP741091:GHHP-1021-MONOMER.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMiSSF51658. SSF51658. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Rahnella sp. Y9602."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Sobecky P.A., Martinez R.J., Woyke T.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Y9602Imported.

Entry informationi

Entry nameiE8XPG8_RAHSY
AccessioniPrimary (citable) accession number: E8XPG8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 4, 2011
Last sequence update: April 4, 2011
Last modified: March 31, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.