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E8WZS0 (E8WZS0_ACISM) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
Ordered Locus Names:AciX9_0660 EMBL ADW67731.1
OrganismAcidobacterium sp. (strain MP5ACTX9) [Complete proteome] [HAMAP]
Taxonomic identifier696844 [NCBI]
Taxonomic lineageBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeAcidobacterium

Protein attributes

Sequence length668 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
E8WZS0 [UniParc].

Last modified April 5, 2011. Version 1.
Checksum: A8600CB90CCE4272

FASTA66872,201
        10         20         30         40         50         60 
MALFGAVAGL AEEMAGTASR LKKRAAIAAA ILAVHEELAE EVGLFCLYLA GLPFAEADPR 

        70         80         90        100        110        120 
KLNAGGALLS KALLAVSGAT GEQLTAGYRK YGDMGAAGFD LLQLHPTSQT RDMGHPLLLG 

       130        140        150        160        170        180 
DVRDAFAGMA TAKTTAIRAG LVEGLLRRAT ALEAKYLLKL MLGDMRIGVK QSLVEEAIGV 

       190        200        210        220        230        240 
AAAAEVADVR HAVMLEADLG GAAMRAFGGT LAEARMRLFH PLGFMLASPV ETPEEAIERF 

       250        260        270        280        290        300 
TAKPVKVAKA KKSKKTEESD ELLVAEIEGA MLEDDKRTTE GTEGKERSTE ATVGVQAFLE 

       310        320        330        340        350        360 
DKYDGMRAQL HFGDAEQVGR VAIYSRNRED ITESFPELCE AFSEASGELG GLILDGEILG 

       370        380        390        400        410        420 
WDFQHGVALP FALLGQRIGR KKVGNEIRQQ VPVVFMAFDL MFERGKLTLG LPLRERRRRL 

       430        440        450        460        470        480 
EEVVGALAEK AVSPLVLTEH AARRHEAQAR MFGGDEEAEA GVARLMLSPS KLVESAEEID 

       490        500        510        520        530        540 
RAYADARARA NEGVMIKAAD SVYLPGRRGL AWVKLKRELA TLDVVVTGAE FGQGRKAGTL 

       550        560        570        580        590        600 
SDYTFAVQTD AGELLNVGKA YSGVTDAEIL ELTEFFKAHT LEDHGHSRTV EPLVIFEVAF 

       610        620        630        640        650        660 
NNVMRSDRHA SGFALRFPRI LRIRTDKPLG EIDTVARVEE IYQSQVDKPK DSAKAVKGSG 


QAVMGQLR 

« Hide

References

[1]"Complete sequence of chromosome of Acidobacterium sp. MP5ACTX9."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Rawat S.R., Mannisto M., Haggblom M.M., Woyke T.
Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MP5ACTX9.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002480 Genomic DNA. Translation: ADW67731.1.
RefSeqYP_004216511.1. NC_015064.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADW67731; ADW67731; AciX9_0660.
GeneID10202642.
KEGGacm:AciX9_0660.
PATRIC46818775. VBIAciSp155132_1310.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000036008.
KOK10747.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE8WZS0_ACISM
AccessionPrimary (citable) accession number: E8WZS0
Entry history
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: October 16, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)