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E8WZS0

- E8WZS0_ACISM

UniProt

E8WZS0 - E8WZS0_ACISM

Protein

DNA ligase

Gene

AciX9_0660

Organism
Acidobacterium sp. (strain MP5ACTX9)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 19 (01 Oct 2014)
      Sequence version 1 (05 Apr 2011)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:AciX9_0660Imported
    OrganismiAcidobacterium sp. (strain MP5ACTX9)Imported
    Taxonomic identifieri696844 [NCBI]
    Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeAcidobacterium
    ProteomesiUP000000343: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    HOGENOMiHOG000036008.
    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E8WZS0-1 [UniParc]FASTAAdd to Basket

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    MALFGAVAGL AEEMAGTASR LKKRAAIAAA ILAVHEELAE EVGLFCLYLA    50
    GLPFAEADPR KLNAGGALLS KALLAVSGAT GEQLTAGYRK YGDMGAAGFD 100
    LLQLHPTSQT RDMGHPLLLG DVRDAFAGMA TAKTTAIRAG LVEGLLRRAT 150
    ALEAKYLLKL MLGDMRIGVK QSLVEEAIGV AAAAEVADVR HAVMLEADLG 200
    GAAMRAFGGT LAEARMRLFH PLGFMLASPV ETPEEAIERF TAKPVKVAKA 250
    KKSKKTEESD ELLVAEIEGA MLEDDKRTTE GTEGKERSTE ATVGVQAFLE 300
    DKYDGMRAQL HFGDAEQVGR VAIYSRNRED ITESFPELCE AFSEASGELG 350
    GLILDGEILG WDFQHGVALP FALLGQRIGR KKVGNEIRQQ VPVVFMAFDL 400
    MFERGKLTLG LPLRERRRRL EEVVGALAEK AVSPLVLTEH AARRHEAQAR 450
    MFGGDEEAEA GVARLMLSPS KLVESAEEID RAYADARARA NEGVMIKAAD 500
    SVYLPGRRGL AWVKLKRELA TLDVVVTGAE FGQGRKAGTL SDYTFAVQTD 550
    AGELLNVGKA YSGVTDAEIL ELTEFFKAHT LEDHGHSRTV EPLVIFEVAF 600
    NNVMRSDRHA SGFALRFPRI LRIRTDKPLG EIDTVARVEE IYQSQVDKPK 650
    DSAKAVKGSG QAVMGQLR 668
    Length:668
    Mass (Da):72,201
    Last modified:April 5, 2011 - v1
    Checksum:iA8600CB90CCE4272
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002480 Genomic DNA. Translation: ADW67731.1.
    RefSeqiYP_004216511.1. NC_015064.1.

    Genome annotation databases

    EnsemblBacteriaiADW67731; ADW67731; AciX9_0660.
    GeneIDi10202642.
    KEGGiacm:AciX9_0660.
    PATRICi46818775. VBIAciSp155132_1310.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002480 Genomic DNA. Translation: ADW67731.1 .
    RefSeqi YP_004216511.1. NC_015064.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADW67731 ; ADW67731 ; AciX9_0660 .
    GeneIDi 10202642.
    KEGGi acm:AciX9_0660.
    PATRICi 46818775. VBIAciSp155132_1310.

    Phylogenomic databases

    HOGENOMi HOG000036008.
    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Acidobacterium sp. MP5ACTX9."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Rawat S.R., Mannisto M., Haggblom M.M., Woyke T.
      Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MP5ACTX9Imported.

    Entry informationi

    Entry nameiE8WZS0_ACISM
    AccessioniPrimary (citable) accession number: E8WZS0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 5, 2011
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 19 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3