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Protein

Alpha-amylase

Gene

GM18_3857

Organism
Geobacter sp. (strain M18)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciGSP443143:GHZL-3929-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:GM18_3857Imported
OrganismiGeobacter sp. (strain M18)Imported
Taxonomic identifieri443143 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
ProteomesiUP000001442 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi443143.GM18_3857.

Structurei

3D structure databases

ProteinModelPortaliE8WRR7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000274290.
KOiK01176.
OMAiDLDPNNW.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

E8WRR7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQDVILHAFD WHYDDIAENA KKIAELGYGA ILIAPPLYSD ERGPEWWQRY
60 70 80 90 100
QPKDYRVVRS YLGGKKQLEQ AIQALHASNV RVYADVVFNH MANEKSARND
110 120 130 140 150
PYNFPGDREL ARYLSEAESF ERDRLYGDLS VGLFCQRDFN PQGDICNWND
160 170 180 190 200
LHESQELWLS GLPDLDLNDW VVEQQKACLS ALNRLGFDGY RIDAIKHLPY
210 220 230 240 250
DHIARVFQTE ILNGKFVFGE ALTCNDHEEC LFLWPLLYIT SISFYDFPLH
260 270 280 290 300
ETLRRTFSTT GSMRELVNPA ANGQALHWSR AVTFSITHDI PNNDGFRWQM
310 320 330 340 350
LDPQDEFLAN VYIMGRDGGI PLVFSDHNQS AARYNSDRNR WNEAWSRQDT
360 370 380 390 400
AGMIAFHNAV HGTPQRPLFE HDGFIVFARG DRGIVAINKT DEWQHPRIWT
410 420 430
NGLKQGRYHC MIHGYDMQVS GEWFDLGIPP RQAQMWLGN
Length:439
Mass (Da):50,849
Last modified:April 5, 2011 - v1
Checksum:iC1393BFE682E1FE4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002479 Genomic DNA. Translation: ADW15282.1.
RefSeqiWP_015722104.1. NC_014973.1.
YP_004200558.1. NC_014973.1.

Genome annotation databases

EnsemblBacteriaiADW15282; ADW15282; GM18_3857.
KEGGigeb:GM18_3857.
PATRICi46951661. VBIGeoSp68312_3825.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002479 Genomic DNA. Translation: ADW15282.1.
RefSeqiWP_015722104.1. NC_014973.1.
YP_004200558.1. NC_014973.1.

3D structure databases

ProteinModelPortaliE8WRR7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi443143.GM18_3857.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADW15282; ADW15282; GM18_3857.
KEGGigeb:GM18_3857.
PATRICi46951661. VBIGeoSp68312_3825.

Phylogenomic databases

HOGENOMiHOG000274290.
KOiK01176.
OMAiDLDPNNW.

Enzyme and pathway databases

BioCyciGSP443143:GHZL-3929-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006048. A-amylase_b_C.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M18Imported.

Entry informationi

Entry nameiE8WRR7_GEOS8
AccessioniPrimary (citable) accession number: E8WRR7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: June 24, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.