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E8WKB5

- E8WKB5_GEOS8

UniProt

E8WKB5 - E8WKB5_GEOS8

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Protein
Submitted name: DNA ligase D
Gene
GM18_0111
Organism
Geobacter sp. (strain M18)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciGSP443143:GHZL-115-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:GM18_0111Imported
OrganismiGeobacter sp. (strain M18)Imported
Taxonomic identifieri443143 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
ProteomesiUP000001442: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E8WKB5-1 [UniParc]FASTAAdd to Basket

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MGLEEYQRKR DLTRTPEPAG KGGRSARTLR FVIHKHAASH LHYDFRLEID    50
GVLKSWAIPK GPSLDPSVKR LSMMVEDHPY EYGDFEGVIP KGNYGAGEVI 100
IWDAGTFHAA ASEERELSLK LLREGLQKGD LKFILHGEKL NGEFALVRIR 150
SDKGNSWLLI KKHDRYAGTE DVTLKERSVV SNATIEDVRA GRMPGRRVFA 200
AQSGEARAGG PAPPPHPTSP LGGEEQSGTP SPGGGKRSEA PMPRRVSPML 250
ATSTAEPFDD PDWLFEIKLD GYRAIAEVSG REVALYSRNN LSFNKKFPSL 300
PGSLASLDVE AVFDGEVVAL DENGRSYFQL LQNYRRTGKG NIAYFIFDLL 350
YLNGEDLRNQ PLLARKERLR TLLPDLPELR YSDHIMEYGR EFFELARQNN 400
LEGILAKRAA SLYQTGRRSK DWLKIKIRMQ QEAVICGFTQ PRRSRKGFGA 450
LVLGVYEDDR LVCIGFAGGG FDEAGLKEMY ELLQPLVQPE PPFGTPVKSD 500
MPITWVKPEL VCEVEFSEWT DENVMRQPIF LGLREDKDPK SVVRELVRSA 550
ATPPQPAAEP ERRAQLPGAT AKEPVAAGIP ASRKGGSGKK GRDEVLILDG 600
HRLELTNLDK VFWPDEGYTK GDVIAYYRIM AHAMLPHLVD RPESLHRTPH 650
GITEGGFFQK EAGELPPSWI TTREIYSKHV DKHIKFFVCQ DEATLVYMAN 700
LGCIEINPWL SRLQHLDYPD YFVIDLDPED IPFAKVIETA LAVREVLDRA 750
GAVSFPKTSG ATGMHIYVPL GAKYDYDTAG GFAKVIATLA HHKVPDFTSL 800
LRSPRLRQKK VYLDFLQNKP GQTLAAPYSI RPRPGATVSA PLKWEEVKPG 850
LDPGRFTIAT MPGRLEHVGD LFSGVLGPGI DLERCIENLE RG 892
Length:892
Mass (Da):99,533
Last modified:April 5, 2011 - v1
Checksum:i2195C5F250CAF723
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002479 Genomic DNA. Translation: ADW11600.1.
RefSeqiWP_015718470.1. NC_014973.1.
YP_004196876.1. NC_014973.1.

Genome annotation databases

EnsemblBacteriaiADW11600; ADW11600; GM18_0111.
GeneIDi10195675.
KEGGigeb:GM18_0111.
PATRICi46944063. VBIGeoSp68312_0109.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002479 Genomic DNA. Translation: ADW11600.1 .
RefSeqi WP_015718470.1. NC_014973.1.
YP_004196876.1. NC_014973.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADW11600 ; ADW11600 ; GM18_0111 .
GeneIDi 10195675.
KEGGi geb:GM18_0111.
PATRICi 46944063. VBIGeoSp68312_0109.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.

Enzyme and pathway databases

BioCyci GSP443143:GHZL-115-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M18Imported.

Entry informationi

Entry nameiE8WKB5_GEOS8
AccessioniPrimary (citable) accession number: E8WKB5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: September 3, 2014
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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