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E8WKB5 (E8WKB5_GEOS8) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:GM18_0111 EMBL ADW11600.1
OrganismGeobacter sp. (strain M18) [Complete proteome] [HAMAP] EMBL ADW11600.1
Taxonomic identifier443143 [NCBI]
Taxonomic lineageBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter

Protein attributes

Sequence length892 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
E8WKB5 [UniParc].

Last modified April 5, 2011. Version 1.
Checksum: 2195C5F250CAF723

FASTA89299,533
        10         20         30         40         50         60 
MGLEEYQRKR DLTRTPEPAG KGGRSARTLR FVIHKHAASH LHYDFRLEID GVLKSWAIPK 

        70         80         90        100        110        120 
GPSLDPSVKR LSMMVEDHPY EYGDFEGVIP KGNYGAGEVI IWDAGTFHAA ASEERELSLK 

       130        140        150        160        170        180 
LLREGLQKGD LKFILHGEKL NGEFALVRIR SDKGNSWLLI KKHDRYAGTE DVTLKERSVV 

       190        200        210        220        230        240 
SNATIEDVRA GRMPGRRVFA AQSGEARAGG PAPPPHPTSP LGGEEQSGTP SPGGGKRSEA 

       250        260        270        280        290        300 
PMPRRVSPML ATSTAEPFDD PDWLFEIKLD GYRAIAEVSG REVALYSRNN LSFNKKFPSL 

       310        320        330        340        350        360 
PGSLASLDVE AVFDGEVVAL DENGRSYFQL LQNYRRTGKG NIAYFIFDLL YLNGEDLRNQ 

       370        380        390        400        410        420 
PLLARKERLR TLLPDLPELR YSDHIMEYGR EFFELARQNN LEGILAKRAA SLYQTGRRSK 

       430        440        450        460        470        480 
DWLKIKIRMQ QEAVICGFTQ PRRSRKGFGA LVLGVYEDDR LVCIGFAGGG FDEAGLKEMY 

       490        500        510        520        530        540 
ELLQPLVQPE PPFGTPVKSD MPITWVKPEL VCEVEFSEWT DENVMRQPIF LGLREDKDPK 

       550        560        570        580        590        600 
SVVRELVRSA ATPPQPAAEP ERRAQLPGAT AKEPVAAGIP ASRKGGSGKK GRDEVLILDG 

       610        620        630        640        650        660 
HRLELTNLDK VFWPDEGYTK GDVIAYYRIM AHAMLPHLVD RPESLHRTPH GITEGGFFQK 

       670        680        690        700        710        720 
EAGELPPSWI TTREIYSKHV DKHIKFFVCQ DEATLVYMAN LGCIEINPWL SRLQHLDYPD 

       730        740        750        760        770        780 
YFVIDLDPED IPFAKVIETA LAVREVLDRA GAVSFPKTSG ATGMHIYVPL GAKYDYDTAG 

       790        800        810        820        830        840 
GFAKVIATLA HHKVPDFTSL LRSPRLRQKK VYLDFLQNKP GQTLAAPYSI RPRPGATVSA 

       850        860        870        880        890 
PLKWEEVKPG LDPGRFTIAT MPGRLEHVGD LFSGVLGPGI DLERCIENLE RG 

« Hide

References

[1]"Complete sequence of Geobacter sp. M18."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Chertkov O., Munk C., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Ovchinnikova G., Pagani I., Holmes D. expand/collapse author list , Aklujkar M., Lovley D., Woyke T.
Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M18 EMBL ADW11600.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002479 Genomic DNA. Translation: ADW11600.1.
RefSeqYP_004196876.1. NC_014973.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADW11600; ADW11600; GM18_0111.
GeneID10195675.
KEGGgeb:GM18_0111.
PATRIC46944063. VBIGeoSp68312_0109.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMAHPLDYAD.

Enzyme and pathway databases

BioCycGSP443143:GHZL-115-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE8WKB5_GEOS8
AccessionPrimary (citable) accession number: E8WKB5
Entry history
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: October 16, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)