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Protein
Submitted name:

DNA ligase D

Gene

GM18_0111

Organism
Geobacter sp. (strain M18)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciGSP443143:GHZL-115-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:GM18_0111Imported
OrganismiGeobacter sp. (strain M18)Imported
Taxonomic identifieri443143 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
ProteomesiUP000001442 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E8WKB5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLEEYQRKR DLTRTPEPAG KGGRSARTLR FVIHKHAASH LHYDFRLEID
60 70 80 90 100
GVLKSWAIPK GPSLDPSVKR LSMMVEDHPY EYGDFEGVIP KGNYGAGEVI
110 120 130 140 150
IWDAGTFHAA ASEERELSLK LLREGLQKGD LKFILHGEKL NGEFALVRIR
160 170 180 190 200
SDKGNSWLLI KKHDRYAGTE DVTLKERSVV SNATIEDVRA GRMPGRRVFA
210 220 230 240 250
AQSGEARAGG PAPPPHPTSP LGGEEQSGTP SPGGGKRSEA PMPRRVSPML
260 270 280 290 300
ATSTAEPFDD PDWLFEIKLD GYRAIAEVSG REVALYSRNN LSFNKKFPSL
310 320 330 340 350
PGSLASLDVE AVFDGEVVAL DENGRSYFQL LQNYRRTGKG NIAYFIFDLL
360 370 380 390 400
YLNGEDLRNQ PLLARKERLR TLLPDLPELR YSDHIMEYGR EFFELARQNN
410 420 430 440 450
LEGILAKRAA SLYQTGRRSK DWLKIKIRMQ QEAVICGFTQ PRRSRKGFGA
460 470 480 490 500
LVLGVYEDDR LVCIGFAGGG FDEAGLKEMY ELLQPLVQPE PPFGTPVKSD
510 520 530 540 550
MPITWVKPEL VCEVEFSEWT DENVMRQPIF LGLREDKDPK SVVRELVRSA
560 570 580 590 600
ATPPQPAAEP ERRAQLPGAT AKEPVAAGIP ASRKGGSGKK GRDEVLILDG
610 620 630 640 650
HRLELTNLDK VFWPDEGYTK GDVIAYYRIM AHAMLPHLVD RPESLHRTPH
660 670 680 690 700
GITEGGFFQK EAGELPPSWI TTREIYSKHV DKHIKFFVCQ DEATLVYMAN
710 720 730 740 750
LGCIEINPWL SRLQHLDYPD YFVIDLDPED IPFAKVIETA LAVREVLDRA
760 770 780 790 800
GAVSFPKTSG ATGMHIYVPL GAKYDYDTAG GFAKVIATLA HHKVPDFTSL
810 820 830 840 850
LRSPRLRQKK VYLDFLQNKP GQTLAAPYSI RPRPGATVSA PLKWEEVKPG
860 870 880 890
LDPGRFTIAT MPGRLEHVGD LFSGVLGPGI DLERCIENLE RG
Length:892
Mass (Da):99,533
Last modified:April 5, 2011 - v1
Checksum:i2195C5F250CAF723
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002479 Genomic DNA. Translation: ADW11600.1.
RefSeqiWP_015718470.1. NC_014973.1.
YP_004196876.1. NC_014973.1.

Genome annotation databases

EnsemblBacteriaiADW11600; ADW11600; GM18_0111.
KEGGigeb:GM18_0111.
PATRICi46944063. VBIGeoSp68312_0109.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002479 Genomic DNA. Translation: ADW11600.1.
RefSeqiWP_015718470.1. NC_014973.1.
YP_004196876.1. NC_014973.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADW11600; ADW11600; GM18_0111.
KEGGigeb:GM18_0111.
PATRICi46944063. VBIGeoSp68312_0109.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.

Enzyme and pathway databases

BioCyciGSP443143:GHZL-115-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: M18Imported.

Entry informationi

Entry nameiE8WKB5_GEOS8
AccessioniPrimary (citable) accession number: E8WKB5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: April 29, 2015
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.