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E8WKB5

- E8WKB5_GEOS8

UniProt

E8WKB5 - E8WKB5_GEOS8

Protein
Submitted name:

DNA ligase D

Gene

GM18_0111

Organism
Geobacter sp. (strain M18)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 18 (01 Oct 2014)
      Sequence version 1 (05 Apr 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciGSP443143:GHZL-115-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:GM18_0111Imported
    OrganismiGeobacter sp. (strain M18)Imported
    Taxonomic identifieri443143 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfuromonadalesGeobacteraceaeGeobacter
    ProteomesiUP000001442: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E8WKB5-1 [UniParc]FASTAAdd to Basket

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    MGLEEYQRKR DLTRTPEPAG KGGRSARTLR FVIHKHAASH LHYDFRLEID    50
    GVLKSWAIPK GPSLDPSVKR LSMMVEDHPY EYGDFEGVIP KGNYGAGEVI 100
    IWDAGTFHAA ASEERELSLK LLREGLQKGD LKFILHGEKL NGEFALVRIR 150
    SDKGNSWLLI KKHDRYAGTE DVTLKERSVV SNATIEDVRA GRMPGRRVFA 200
    AQSGEARAGG PAPPPHPTSP LGGEEQSGTP SPGGGKRSEA PMPRRVSPML 250
    ATSTAEPFDD PDWLFEIKLD GYRAIAEVSG REVALYSRNN LSFNKKFPSL 300
    PGSLASLDVE AVFDGEVVAL DENGRSYFQL LQNYRRTGKG NIAYFIFDLL 350
    YLNGEDLRNQ PLLARKERLR TLLPDLPELR YSDHIMEYGR EFFELARQNN 400
    LEGILAKRAA SLYQTGRRSK DWLKIKIRMQ QEAVICGFTQ PRRSRKGFGA 450
    LVLGVYEDDR LVCIGFAGGG FDEAGLKEMY ELLQPLVQPE PPFGTPVKSD 500
    MPITWVKPEL VCEVEFSEWT DENVMRQPIF LGLREDKDPK SVVRELVRSA 550
    ATPPQPAAEP ERRAQLPGAT AKEPVAAGIP ASRKGGSGKK GRDEVLILDG 600
    HRLELTNLDK VFWPDEGYTK GDVIAYYRIM AHAMLPHLVD RPESLHRTPH 650
    GITEGGFFQK EAGELPPSWI TTREIYSKHV DKHIKFFVCQ DEATLVYMAN 700
    LGCIEINPWL SRLQHLDYPD YFVIDLDPED IPFAKVIETA LAVREVLDRA 750
    GAVSFPKTSG ATGMHIYVPL GAKYDYDTAG GFAKVIATLA HHKVPDFTSL 800
    LRSPRLRQKK VYLDFLQNKP GQTLAAPYSI RPRPGATVSA PLKWEEVKPG 850
    LDPGRFTIAT MPGRLEHVGD LFSGVLGPGI DLERCIENLE RG 892
    Length:892
    Mass (Da):99,533
    Last modified:April 5, 2011 - v1
    Checksum:i2195C5F250CAF723
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002479 Genomic DNA. Translation: ADW11600.1.
    RefSeqiWP_015718470.1. NC_014973.1.
    YP_004196876.1. NC_014973.1.

    Genome annotation databases

    EnsemblBacteriaiADW11600; ADW11600; GM18_0111.
    GeneIDi10195675.
    KEGGigeb:GM18_0111.
    PATRICi46944063. VBIGeoSp68312_0109.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002479 Genomic DNA. Translation: ADW11600.1 .
    RefSeqi WP_015718470.1. NC_014973.1.
    YP_004196876.1. NC_014973.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADW11600 ; ADW11600 ; GM18_0111 .
    GeneIDi 10195675.
    KEGGi geb:GM18_0111.
    PATRICi 46944063. VBIGeoSp68312_0109.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.

    Enzyme and pathway databases

    BioCyci GSP443143:GHZL-115-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: M18Imported.

    Entry informationi

    Entry nameiE8WKB5_GEOS8
    AccessioniPrimary (citable) accession number: E8WKB5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 5, 2011
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 18 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3