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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligD

Organism
Bacillus subtilis (strain BSn5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBSUB936156:GHCY-3829-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
Ordered Locus Names:BSn5_18735Imported
OrganismiBacillus subtilis (strain BSn5)Imported
Taxonomic identifieri936156 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000007474 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000008893.
KOiK01971.
OMAiDWTIRSI.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E8VIV9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFTMQPVLT SSPPIGAEWR YEVKYDGYRC ILRIHSSGVT LTSRNGVELS
60 70 80 90 100
STFPEITQFA KTAFQHMEKE LPLTLDGEIV CLVNPCRADF EHLQVRGRLK
110 120 130 140 150
RPDKIQESAN ARPCCFLAFD LLERSGEDVT LLSYLDRKKS LRELISAAKL
160 170 180 190 200
PASPDPYAKE TIQSIPCYDH FDQLWEMVIK YDGEGIVAKK TNSKWLEKKR
210 220 230 240 250
SSDWLKYKNF KQAYVCITGF NPNNGFLTVS VLKNGIMTPI ASVSHGMRDE
260 270 280 290 300
EKSAIRKIME QHGQQTPSGE FTLEPSICAA VQYLTILQGT LREVSFIGFE
310 320 330 340 350
FQMDWTECTY AQVIRHSKPV HPKLQFTSLD KIIFEKNKKT KEDFIQYMIE
360 370 380 390 400
VSDYLLPFLK NRAVTVIRYP HGSRSESFFQ KNKPDYAPDF VQSFYDGSHE
410 420 430 440 450
HIVCEDMSTL LWLCNQLALE FHVPFQTIKS RRPAEIVIDL DPPSRDDFLM
460 470 480 490 500
AVQAANELKR LLDSFGITSY PKLSGNKGIQ LYIPLSPEAF TYEETRHFTQ
510 520 530 540 550
LIAEYCTNAF PELFTTERLI KNRHGKLYLD YLQHAEGKTI ICPYSTRGNE
560 570 580 590 600
LGTVAAPLYW HEVQSSLTPA LFTIDTVIDR IKKQGCPFFD FYRNPQDEPL
610
SAILHQLKKK S
Length:611
Mass (Da):70,175
Last modified:April 5, 2011 - v1
Checksum:iACFEF9CD12A44828
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002468 Genomic DNA. Translation: ADV96353.1.
RefSeqiWP_015715773.1. NC_014976.1.
YP_004207380.1. NC_014976.1.

Genome annotation databases

EnsemblBacteriaiADV96353; ADV96353; BSn5_18735.
KEGGibsn:BSn5_18735.
PATRICi46874974. VBIBacSub180317_3824.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002468 Genomic DNA. Translation: ADV96353.1.
RefSeqiWP_015715773.1. NC_014976.1.
YP_004207380.1. NC_014976.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADV96353; ADV96353; BSn5_18735.
KEGGibsn:BSn5_18735.
PATRICi46874974. VBIBacSub180317_3824.

Phylogenomic databases

HOGENOMiHOG000008893.
KOiK01971.
OMAiDWTIRSI.

Enzyme and pathway databases

BioCyciBSUB936156:GHCY-3829-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Bacillus subtilis BSn5, an endophytic bacterium of Amorphophallus konjac with antimicrobial activity to plant pathogen Erwinia carotovora subsp. carotovora."
    Deng Y., Zhu Y., Wang P., Zhu L., Zheng J., Li R., Ruan L., Peng D., Sun M.
    J. Bacteriol. 193:2070-2071(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BSn5Imported.
  2. "Complete Genome Sequence of Bacillus Subtilis BSn5, a Strain of Plant-associated Bacterium with Antimicrobial Activity to Soil-borne Plant Pathogens."
    Deng Y., Sun M.
    Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BSn5.

Entry informationi

Entry nameiE8VIV9_BACST
AccessioniPrimary (citable) accession number: E8VIV9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: April 29, 2015
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.