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E8VIV9 (E8VIV9_BACST) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL ADV96353.1
Gene names
Name:ligD EMBL ADV96353.1
Ordered Locus Names:BSn5_18735 EMBL ADV96353.1
OrganismBacillus subtilis (strain BSn5) [Complete proteome] [HAMAP] EMBL ADV96353.1
Taxonomic identifier936156 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length611 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADV96353.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E8VIV9 [UniParc].

Last modified April 5, 2011. Version 1.
Checksum: ACFEF9CD12A44828

FASTA61170,175
        10         20         30         40         50         60 
MAFTMQPVLT SSPPIGAEWR YEVKYDGYRC ILRIHSSGVT LTSRNGVELS STFPEITQFA 

        70         80         90        100        110        120 
KTAFQHMEKE LPLTLDGEIV CLVNPCRADF EHLQVRGRLK RPDKIQESAN ARPCCFLAFD 

       130        140        150        160        170        180 
LLERSGEDVT LLSYLDRKKS LRELISAAKL PASPDPYAKE TIQSIPCYDH FDQLWEMVIK 

       190        200        210        220        230        240 
YDGEGIVAKK TNSKWLEKKR SSDWLKYKNF KQAYVCITGF NPNNGFLTVS VLKNGIMTPI 

       250        260        270        280        290        300 
ASVSHGMRDE EKSAIRKIME QHGQQTPSGE FTLEPSICAA VQYLTILQGT LREVSFIGFE 

       310        320        330        340        350        360 
FQMDWTECTY AQVIRHSKPV HPKLQFTSLD KIIFEKNKKT KEDFIQYMIE VSDYLLPFLK 

       370        380        390        400        410        420 
NRAVTVIRYP HGSRSESFFQ KNKPDYAPDF VQSFYDGSHE HIVCEDMSTL LWLCNQLALE 

       430        440        450        460        470        480 
FHVPFQTIKS RRPAEIVIDL DPPSRDDFLM AVQAANELKR LLDSFGITSY PKLSGNKGIQ 

       490        500        510        520        530        540 
LYIPLSPEAF TYEETRHFTQ LIAEYCTNAF PELFTTERLI KNRHGKLYLD YLQHAEGKTI 

       550        560        570        580        590        600 
ICPYSTRGNE LGTVAAPLYW HEVQSSLTPA LFTIDTVIDR IKKQGCPFFD FYRNPQDEPL 

       610 
SAILHQLKKK S 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Bacillus subtilis BSn5, an endophytic bacterium of Amorphophallus konjac with antimicrobial activity for the plant pathogen Erwinia carotovora subsp. carotovora."
Deng Y., Zhu Y., Wang P., Zhu L., Zheng J., Li R., Ruan L., Peng D., Sun M.
J. Bacteriol. 193:2070-2071(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: BSn5 EMBL ADV96353.1.
[2]"Complete Genome Sequence of Bacillus Subtilis BSn5, a Strain of Plant-associated Bacterium with Antimicrobial Activity to Soil-borne Plant Pathogens."
Deng Y., Sun M.
Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BSn5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002468 Genomic DNA. Translation: ADV96353.1.
RefSeqYP_004207380.1. NC_014976.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADV96353; ADV96353; BSn5_18735.
GeneID10184477.
KEGGbsn:BSn5_18735.
PATRIC46874974. VBIBacSub180317_3824.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000008893.
KOK01971.

Enzyme and pathway databases

BioCycBSUB936156:GHCY-3829-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE8VIV9_BACST
AccessionPrimary (citable) accession number: E8VIV9
Entry history
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: April 16, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)