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E8V3M5 (E8V3M5_TERSS) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length630 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
E8V3M5 [UniParc].

Last modified April 5, 2011. Version 1.
Checksum: 6931CDA56D387B40

FASTA63068,879
        10         20         30         40         50         60 
MALFLQLAEL ADVLAATSSR LKKRAAIAEG ITAVHAQSPE EAGLFALYLA GQTFPEADPR 

        70         80         90        100        110        120 
KLNAGGAVLS RIIASISHAA DTAMTEAYRR HGDLGAATHD LFLDAGHNPP PTLTFTDLHD 

       130        140        150        160        170        180 
AFAQASIART TVIRQIVLTD LLTRAIPVEA KYLIKLMLGD MRIGVKQSLV EEAIAVAAEA 

       190        200        210        220        230        240 
SLSDVRNAVM LQADLACATE MAFAKTLREA RMRLFHPLGF MLASPVETPE EAVERFAKIP 

       250        260        270        280        290        300 
VESDASTPPP THVEPDPPSV SEDAYTVTAQ EEISPEAIHI HAQIEDKYDG MRVQLHCGDP 

       310        320        330        340        350        360 
AQPGRVALYS RNREDVTESY PEIAEAFAHA ESGAMILDGE LLAWDVQQER ALPFAVLSPR 

       370        380        390        400        410        420 
IGRKRVSNEV RTATPVVFMA FDVLYASDSL LLDLPLRERR NRLEAIAERL LAVTHSPLAL 

       430        440        450        460        470        480 
PATADTGLFA HDNGAAQTGV QRLLLSPISL AYSAEDLDRA YNAARERGNE GVMIKAADSI 

       490        500        510        520        530        540 
YQPGRRGISW VKLKRQLGTL DVVITGAEYG HGKRSQFLSD YTFAIRAPEG DLLNVGKAYS 

       550        560        570        580        590        600 
GVTDAEIVKL TAWLKDHTLE DQGHFRTVEP GIVLEVAFNN VMRSSRHASG FALRFPRILR 

       610        620        630 
IRTDKPLEEI DTLERVEEIY QSQPDKPAEA 

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References

[1]"Complete genome sequence of Terriglobus saanensis type strain SP1PR4(T), an Acidobacteria from tundra soil."
Rawat S.R., Mannisto M.K., Starovoytov V., Goodwin L., Nolan M., Hauser L., Land M., Davenport K.W., Woyke T., Haggblom M.M.
Stand. Genomic Sci. 7:59-69(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC BAA-1853 / DSM 23119 / SP1PR4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002467 Genomic DNA. Translation: ADV84712.1.
RefSeqYP_004184706.1. NC_014963.1.

3D structure databases

ProteinModelPortalE8V3M5.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADV84712; ADV84712; AciPR4_3963.
GeneID10161908.
KEGGtsa:AciPR4_3963.
PATRIC46833881. VBITerSaa54836_4105.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000036008.
KOK10747.

Enzyme and pathway databases

BioCycTSAA401053:GHYY-4018-MONOMER.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE8V3M5_TERSS
AccessionPrimary (citable) accession number: E8V3M5
Entry history
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: March 19, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)