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E8V3M5

- E8V3M5_TERSS

UniProt

E8V3M5 - E8V3M5_TERSS

Protein

DNA ligase

Gene

AciPR4_3963

Organism
Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (05 Apr 2011)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciTSAA401053:GHYY-4018-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:AciPR4_3963Imported
    OrganismiTerriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)Imported
    Taxonomic identifieri401053 [NCBI]
    Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeTerriglobus
    ProteomesiUP000006844: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliE8V3M5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000036008.
    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E8V3M5-1 [UniParc]FASTAAdd to Basket

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    MALFLQLAEL ADVLAATSSR LKKRAAIAEG ITAVHAQSPE EAGLFALYLA    50
    GQTFPEADPR KLNAGGAVLS RIIASISHAA DTAMTEAYRR HGDLGAATHD 100
    LFLDAGHNPP PTLTFTDLHD AFAQASIART TVIRQIVLTD LLTRAIPVEA 150
    KYLIKLMLGD MRIGVKQSLV EEAIAVAAEA SLSDVRNAVM LQADLACATE 200
    MAFAKTLREA RMRLFHPLGF MLASPVETPE EAVERFAKIP VESDASTPPP 250
    THVEPDPPSV SEDAYTVTAQ EEISPEAIHI HAQIEDKYDG MRVQLHCGDP 300
    AQPGRVALYS RNREDVTESY PEIAEAFAHA ESGAMILDGE LLAWDVQQER 350
    ALPFAVLSPR IGRKRVSNEV RTATPVVFMA FDVLYASDSL LLDLPLRERR 400
    NRLEAIAERL LAVTHSPLAL PATADTGLFA HDNGAAQTGV QRLLLSPISL 450
    AYSAEDLDRA YNAARERGNE GVMIKAADSI YQPGRRGISW VKLKRQLGTL 500
    DVVITGAEYG HGKRSQFLSD YTFAIRAPEG DLLNVGKAYS GVTDAEIVKL 550
    TAWLKDHTLE DQGHFRTVEP GIVLEVAFNN VMRSSRHASG FALRFPRILR 600
    IRTDKPLEEI DTLERVEEIY QSQPDKPAEA 630
    Length:630
    Mass (Da):68,879
    Last modified:April 5, 2011 - v1
    Checksum:i6931CDA56D387B40
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002467 Genomic DNA. Translation: ADV84712.1.
    RefSeqiYP_004184706.1. NC_014963.1.

    Genome annotation databases

    EnsemblBacteriaiADV84712; ADV84712; AciPR4_3963.
    GeneIDi10161908.
    KEGGitsa:AciPR4_3963.
    PATRICi46833881. VBITerSaa54836_4105.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002467 Genomic DNA. Translation: ADV84712.1 .
    RefSeqi YP_004184706.1. NC_014963.1.

    3D structure databases

    ProteinModelPortali E8V3M5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADV84712 ; ADV84712 ; AciPR4_3963 .
    GeneIDi 10161908.
    KEGGi tsa:AciPR4_3963.
    PATRICi 46833881. VBITerSaa54836_4105.

    Phylogenomic databases

    HOGENOMi HOG000036008.
    KOi K10747.

    Enzyme and pathway databases

    BioCyci TSAA401053:GHYY-4018-MONOMER.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Terriglobus saanensis type strain SP1PR4(T), an Acidobacteria from tundra soil."
      Rawat S.R., Mannisto M.K., Starovoytov V., Goodwin L., Nolan M., Hauser L., Land M., Davenport K.W., Woyke T., Haggblom M.M.
      Stand. Genomic Sci. 7:59-69(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: ATCC BAA-1853 / DSM 23119 / SP1PR4Imported.

    Entry informationi

    Entry nameiE8V3M5_TERSS
    AccessioniPrimary (citable) accession number: E8V3M5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 5, 2011
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3