E8V3M5 (E8V3M5_TERSS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617

Gene names

Ordered Locus Names:

AciPR4_3963 EMBL ADV84712.1

Organism

Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) [Complete proteome] [HAMAP] EMBL ADV84712.1

Taxonomic identifier

401053 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Fibrobacteres/Acidobacteria group › Acidobacteria › Acidobacteriia › Acidobacteriales › Acidobacteriaceae › Terriglobus › Terriglobus saanensis

Protein attributes

Sequence length	630 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617
Sequence similarities	Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Ontologies

Keywords
Biological process	DNA damage DNA recombination RuleBase RU000617 DNA repair RuleBase RU000617 DNA replication RuleBase RU000617
Ligand	ATP-binding RuleBase RU000617 Nucleotide-binding
Molecular function	Ligase RuleBase RU000617 EMBL ADV84712.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E8V3M5 [UniParc]. Last modified April 5, 2011. Version 1. Checksum: 6931CDA56D387B40	FASTA	630	68,879
	10 20 30 40 50 60 MALFLQLAEL ADVLAATSSR LKKRAAIAEG ITAVHAQSPE EAGLFALYLA GQTFPEADPR 70 80 90 100 110 120 KLNAGGAVLS RIIASISHAA DTAMTEAYRR HGDLGAATHD LFLDAGHNPP PTLTFTDLHD 130 140 150 160 170 180 AFAQASIART TVIRQIVLTD LLTRAIPVEA KYLIKLMLGD MRIGVKQSLV EEAIAVAAEA 190 200 210 220 230 240 SLSDVRNAVM LQADLACATE MAFAKTLREA RMRLFHPLGF MLASPVETPE EAVERFAKIP 250 260 270 280 290 300 VESDASTPPP THVEPDPPSV SEDAYTVTAQ EEISPEAIHI HAQIEDKYDG MRVQLHCGDP 310 320 330 340 350 360 AQPGRVALYS RNREDVTESY PEIAEAFAHA ESGAMILDGE LLAWDVQQER ALPFAVLSPR 370 380 390 400 410 420 IGRKRVSNEV RTATPVVFMA FDVLYASDSL LLDLPLRERR NRLEAIAERL LAVTHSPLAL 430 440 450 460 470 480 PATADTGLFA HDNGAAQTGV QRLLLSPISL AYSAEDLDRA YNAARERGNE GVMIKAADSI 490 500 510 520 530 540 YQPGRRGISW VKLKRQLGTL DVVITGAEYG HGKRSQFLSD YTFAIRAPEG DLLNVGKAYS 550 560 570 580 590 600 GVTDAEIVKL TAWLKDHTLE DQGHFRTVEP GIVLEVAFNN VMRSSRHASG FALRFPRILR 610 620 630 IRTDKPLEEI DTLERVEEIY QSQPDKPAEA

References

[1]

"Complete sequence of Terriglobus saanensis SP1PR4." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Zeytun A., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I., Rawat S.R., Mannisto M.K., Haggblom M.M., Woyke T. Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1853 / DSM 23119 / SP1PR4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002467 Genomic DNA. Translation: ADV84712.1.
RefSeq	YP_004184706.1. NC_014963.1.
3D structure databases
ProteinModelPortal	E8V3M5.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADV84712; ADV84712; AciPR4_3963.
GeneID	10161908.
KEGG	tsa:AciPR4_3963.
PATRIC	46833881. VBITerSaa54836_4105.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000036008.
KO	K10747.
Enzyme and pathway databases
BioCyc	TSAA401053:GHYY-4018-MONOMER.
Family and domain databases
Gene3D	1.10.3260.10. 1 hit. 2.40.50.140. 1 hit.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E8V3M5_TERSS

Accession

Primary (citable) accession number: E8V3M5

Entry history

Integrated into UniProtKB/TrEMBL:	April 5, 2011
Last sequence update:	April 5, 2011
Last modified:	May 29, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)