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E8V3M5

- E8V3M5_TERSS

UniProt

E8V3M5 - E8V3M5_TERSS

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Protein
DNA ligase
Gene
AciPR4_3963
Organism
Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciTSAA401053:GHYY-4018-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:AciPR4_3963Imported
OrganismiTerriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)Imported
Taxonomic identifieri401053 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeTerriglobus
ProteomesiUP000006844: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE8V3M5.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000036008.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E8V3M5-1 [UniParc]FASTAAdd to Basket

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MALFLQLAEL ADVLAATSSR LKKRAAIAEG ITAVHAQSPE EAGLFALYLA    50
GQTFPEADPR KLNAGGAVLS RIIASISHAA DTAMTEAYRR HGDLGAATHD 100
LFLDAGHNPP PTLTFTDLHD AFAQASIART TVIRQIVLTD LLTRAIPVEA 150
KYLIKLMLGD MRIGVKQSLV EEAIAVAAEA SLSDVRNAVM LQADLACATE 200
MAFAKTLREA RMRLFHPLGF MLASPVETPE EAVERFAKIP VESDASTPPP 250
THVEPDPPSV SEDAYTVTAQ EEISPEAIHI HAQIEDKYDG MRVQLHCGDP 300
AQPGRVALYS RNREDVTESY PEIAEAFAHA ESGAMILDGE LLAWDVQQER 350
ALPFAVLSPR IGRKRVSNEV RTATPVVFMA FDVLYASDSL LLDLPLRERR 400
NRLEAIAERL LAVTHSPLAL PATADTGLFA HDNGAAQTGV QRLLLSPISL 450
AYSAEDLDRA YNAARERGNE GVMIKAADSI YQPGRRGISW VKLKRQLGTL 500
DVVITGAEYG HGKRSQFLSD YTFAIRAPEG DLLNVGKAYS GVTDAEIVKL 550
TAWLKDHTLE DQGHFRTVEP GIVLEVAFNN VMRSSRHASG FALRFPRILR 600
IRTDKPLEEI DTLERVEEIY QSQPDKPAEA 630
Length:630
Mass (Da):68,879
Last modified:April 5, 2011 - v1
Checksum:i6931CDA56D387B40
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002467 Genomic DNA. Translation: ADV84712.1.
RefSeqiYP_004184706.1. NC_014963.1.

Genome annotation databases

EnsemblBacteriaiADV84712; ADV84712; AciPR4_3963.
GeneIDi10161908.
KEGGitsa:AciPR4_3963.
PATRICi46833881. VBITerSaa54836_4105.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002467 Genomic DNA. Translation: ADV84712.1 .
RefSeqi YP_004184706.1. NC_014963.1.

3D structure databases

ProteinModelPortali E8V3M5.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADV84712 ; ADV84712 ; AciPR4_3963 .
GeneIDi 10161908.
KEGGi tsa:AciPR4_3963.
PATRICi 46833881. VBITerSaa54836_4105.

Phylogenomic databases

HOGENOMi HOG000036008.
KOi K10747.

Enzyme and pathway databases

BioCyci TSAA401053:GHYY-4018-MONOMER.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Terriglobus saanensis type strain SP1PR4(T), an Acidobacteria from tundra soil."
    Rawat S.R., Mannisto M.K., Starovoytov V., Goodwin L., Nolan M., Hauser L., Land M., Davenport K.W., Woyke T., Haggblom M.M.
    Stand. Genomic Sci. 7:59-69(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC BAA-1853 / DSM 23119 / SP1PR4.

Entry informationi

Entry nameiE8V3M5_TERSS
AccessioniPrimary (citable) accession number: E8V3M5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: March 19, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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