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Protein
Submitted name:

DNA ligase D

Gene

AciPR4_1657

Organism
Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciTSAA401053:GHYY-1675-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:AciPR4_1657Imported
OrganismiTerriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)Imported
Taxonomic identifieri401053 [NCBI]
Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeTerriglobus
ProteomesiUP000006844: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E8V3A7-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MKMATAKKAP AKKSATKKTA TEKAAKKVSA KAAVKSASPK TAVKKAAAKK
60 70 80 90 100
AVPYADAGDQ IDTQLARYRS MRNFGVTAEP SGGSKSSKLK SDAFPFVIQK
110 120 130 140 150
HAASHLHYDF RLGWNGVLKS WAVAKGPSYF TGDRRLAVQV EDHPMEYGGF
160 170 180 190 200
EGIIPKGQYG GGTVMVWDQG TWEPHVDVDE GLSKGTLKFA MNGTKMKGNW
210 220 230 240 250
TLVRMNNMSG NKPNWLLIKE HDEFERTKDD PCVTAEEPNS VVTGRSLEQI
260 270 280 290 300
AAAETHVWQS NRTKNAGQAW FRNDDTQVGS DQTEAPETEA VVKAAPKEDK
310 320 330 340 350
KKASEKVIDL KAKLAPLPKE KLPDFIAPQL ASHADTPPEH GDWLHELKLD
360 370 380 390 400
GYRIQARKQG DKIQLLTRTG LDWTHRMKPV AEALRSLKAK DALVDGEVVV
410 420 430 440 450
LDESGISSFA KLQASFEQGE KHPMTYFVFD LLHLDAADTR KLPLRERKSL
460 470 480 490 500
LTAILPSSTE IQMSEHLHLD GGSVFQHACE LHAEGIISKR ADAPYTPGRN
510 520 530 540 550
ASWVKSKCVR EQEFVIGGFT LPSNDTYGIG SLLLGYYRDG KLIYAGRTGT
560 570 580 590 600
GFTQKIHRML RDKLEGLRTK SVTFDQIPAV AKRDANWVKP ELLAQVRFAT
610 620 630 640 650
WTADDLVRQA SYLGLREDKL AADVRREEAT VAPKPRSARV SVKVPSASIA
660 670 680 690 700
AKVAPAKAKK AKSEDAPRTT VPVRLTHPEK ILDETTGITK LQLAEYYWAI
710 720 730 740 750
AEHMLPHIED RPLSLVRCPE GSGKPCFFQK HTNHMLPPGI GSVMVPNKKT
760 770 780 790 800
GEPESYITLN TAEALAGLAQ MGVLEVHPWG SKNSDLEHPD RIIIDLDPDE
810 820 830 840 850
AITWKQLSDS AESVRNGLET IGLKSFLKTT GGKGLHVVIP MTPNHDWTQV
860 870 880 890 900
KAWSHAFAQA FEKEQPDLYL TKMTKSARKG KIYIDYLRNE RGATAVAPFS
910 920 930 940 950
PRARPGATVS VPLAWKELAS PKHPAFSIQD FENWKARLKS DPWKNMQGIK

QTLPGLS
Length:957
Mass (Da):105,736
Last modified:April 5, 2011 - v1
Checksum:i4D89F25806BE80B6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002467 Genomic DNA. Translation: ADV82464.1.
RefSeqiYP_004182458.1. NC_014963.1.

Genome annotation databases

EnsemblBacteriaiADV82464; ADV82464; AciPR4_1657.
GeneIDi10159565.
KEGGitsa:AciPR4_1657.
PATRICi46829060. VBITerSaa54836_1733.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002467 Genomic DNA. Translation: ADV82464.1.
RefSeqiYP_004182458.1. NC_014963.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADV82464; ADV82464; AciPR4_1657.
GeneIDi10159565.
KEGGitsa:AciPR4_1657.
PATRICi46829060. VBITerSaa54836_1733.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.

Enzyme and pathway databases

BioCyciTSAA401053:GHYY-1675-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Terriglobus saanensis type strain SP1PR4(T), an Acidobacteria from tundra soil."
    Rawat S.R., Mannisto M.K., Starovoytov V., Goodwin L., Nolan M., Hauser L., Land M., Davenport K.W., Woyke T., Haggblom M.M.
    Stand. Genomic Sci. 7:59-69(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC BAA-1853 / DSM 23119 / SP1PR4Imported.

Entry informationi

Entry nameiE8V3A7_TERSS
AccessioniPrimary (citable) accession number: E8V3A7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: January 7, 2015
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.