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E8V3A7

- E8V3A7_TERSS

UniProt

E8V3A7 - E8V3A7_TERSS

Protein
Submitted name:

DNA ligase D

Gene

AciPR4_1657

Organism
Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (05 Apr 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciTSAA401053:GHYY-1675-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:AciPR4_1657Imported
    OrganismiTerriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4)Imported
    Taxonomic identifieri401053 [NCBI]
    Taxonomic lineageiBacteriaAcidobacteriaAcidobacterialesAcidobacteriaceaeTerriglobus
    ProteomesiUP000006844: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E8V3A7-1 [UniParc]FASTAAdd to Basket

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    MKMATAKKAP AKKSATKKTA TEKAAKKVSA KAAVKSASPK TAVKKAAAKK    50
    AVPYADAGDQ IDTQLARYRS MRNFGVTAEP SGGSKSSKLK SDAFPFVIQK 100
    HAASHLHYDF RLGWNGVLKS WAVAKGPSYF TGDRRLAVQV EDHPMEYGGF 150
    EGIIPKGQYG GGTVMVWDQG TWEPHVDVDE GLSKGTLKFA MNGTKMKGNW 200
    TLVRMNNMSG NKPNWLLIKE HDEFERTKDD PCVTAEEPNS VVTGRSLEQI 250
    AAAETHVWQS NRTKNAGQAW FRNDDTQVGS DQTEAPETEA VVKAAPKEDK 300
    KKASEKVIDL KAKLAPLPKE KLPDFIAPQL ASHADTPPEH GDWLHELKLD 350
    GYRIQARKQG DKIQLLTRTG LDWTHRMKPV AEALRSLKAK DALVDGEVVV 400
    LDESGISSFA KLQASFEQGE KHPMTYFVFD LLHLDAADTR KLPLRERKSL 450
    LTAILPSSTE IQMSEHLHLD GGSVFQHACE LHAEGIISKR ADAPYTPGRN 500
    ASWVKSKCVR EQEFVIGGFT LPSNDTYGIG SLLLGYYRDG KLIYAGRTGT 550
    GFTQKIHRML RDKLEGLRTK SVTFDQIPAV AKRDANWVKP ELLAQVRFAT 600
    WTADDLVRQA SYLGLREDKL AADVRREEAT VAPKPRSARV SVKVPSASIA 650
    AKVAPAKAKK AKSEDAPRTT VPVRLTHPEK ILDETTGITK LQLAEYYWAI 700
    AEHMLPHIED RPLSLVRCPE GSGKPCFFQK HTNHMLPPGI GSVMVPNKKT 750
    GEPESYITLN TAEALAGLAQ MGVLEVHPWG SKNSDLEHPD RIIIDLDPDE 800
    AITWKQLSDS AESVRNGLET IGLKSFLKTT GGKGLHVVIP MTPNHDWTQV 850
    KAWSHAFAQA FEKEQPDLYL TKMTKSARKG KIYIDYLRNE RGATAVAPFS 900
    PRARPGATVS VPLAWKELAS PKHPAFSIQD FENWKARLKS DPWKNMQGIK 950
    QTLPGLS 957
    Length:957
    Mass (Da):105,736
    Last modified:April 5, 2011 - v1
    Checksum:i4D89F25806BE80B6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002467 Genomic DNA. Translation: ADV82464.1.
    RefSeqiYP_004182458.1. NC_014963.1.

    Genome annotation databases

    EnsemblBacteriaiADV82464; ADV82464; AciPR4_1657.
    GeneIDi10159565.
    KEGGitsa:AciPR4_1657.
    PATRICi46829060. VBITerSaa54836_1733.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002467 Genomic DNA. Translation: ADV82464.1 .
    RefSeqi YP_004182458.1. NC_014963.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADV82464 ; ADV82464 ; AciPR4_1657 .
    GeneIDi 10159565.
    KEGGi tsa:AciPR4_1657.
    PATRICi 46829060. VBITerSaa54836_1733.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci TSAA401053:GHYY-1675-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Terriglobus saanensis type strain SP1PR4(T), an Acidobacteria from tundra soil."
      Rawat S.R., Mannisto M.K., Starovoytov V., Goodwin L., Nolan M., Hauser L., Land M., Davenport K.W., Woyke T., Haggblom M.M.
      Stand. Genomic Sci. 7:59-69(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: ATCC BAA-1853 / DSM 23119 / SP1PR4Imported.

    Entry informationi

    Entry nameiE8V3A7_TERSS
    AccessioniPrimary (citable) accession number: E8V3A7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 5, 2011
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3