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E8TFS2

- E8TFS2_MESCW

UniProt

E8TFS2 - E8TFS2_MESCW

Protein
Submitted name:

DNA ligase D

Gene

Mesci_0783

Organism
Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (05 Apr 2011)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMCIC765698:GHQ5-789-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Mesci_0783Imported
    OrganismiMesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)Imported
    Taxonomic identifieri765698 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium
    ProteomesiUP000007471: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliE8TFS2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSACDMAL.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E8TFS2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASLEQYHSK RDFKKTAEPA GKVARTKQGE AGGIFVIHKH AATRLHYDLR    50
    LEHDGVLWSW AVTRGPSLDP HEKRLAVHVE DHPIDYAPFE GTIPKGEYGG 100
    GSVIVWDEGT WIPEIDPAKA MKKGHISFEL RGHKLHGAWH LVRLKPRAGE 150
    KRDNWLLIKS DDAAARPGED ILKEAPESVK SGLTIEEVGE GKTAKGEKPK 200
    VWHSNKPAAV KTKAGKRLDF IEPQLATLER DAPPGKDWLH EVKFDGYRMQ 250
    AQIAGTDVRL LTRTGLDWTK KFGGEIVAEL AGLKCSDAIL DGEVVVLADS 300
    GVSSFALLQQ DLSAKRTNRF IYYVFDLMRL DGRDLRREPL VERKQALQEL 350
    LGEHSDNAAV RFSDHFAEPG KIMLEHACRM GLEGVVSKRA DAPYRSGRGP 400
    TWVKSKCTAR QEFVIGGYLP SDKTGRGLRS ILVGFHEGGK LHYAGRVGTG 450
    FSGKGANELK AKLDALTAKS SPFSTAVPKG KGLVWVKPEL VGEVEFRSWT 500
    SDRIIRHASF QGLREDKPAE EVVQEKPKAA TGMPSTGKST AKPASGGKAA 550
    GSMTTTVKLS HPDKLLWPDE NISKQGLLDH YAQVWPRMEQ FVVNRPLSLV 600
    RAPDGVGGQR FFQKHASAGM SDKIARMKDP TDGEEILFIR DFDGVAALVQ 650
    YGVVEIHIWG CTIDEIEKPD QIIFDLDPDE GVDVKAVREA ALDIRGKLDE 700
    LSLPNFVKTS GGKGYHVLVP LKPAADWDAV KGFAHDFARA LEQGAPDRYT 750
    ATLSKKARTG KIFVDYLRNG RGSTTVAPYS SRAKKGATVS MPVTWPEIEA 800
    GLPPNAFPIG DKTTLKQLAK ADPWREFFKQ GKTLKRG 837
    Length:837
    Mass (Da):92,161
    Last modified:April 5, 2011 - v1
    Checksum:iB1C76C12ED036C2E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002447 Genomic DNA. Translation: ADV09952.1.
    RefSeqiYP_004140002.1. NC_014923.1.

    Genome annotation databases

    EnsemblBacteriaiADV09952; ADV09952; Mesci_0783.
    GeneIDi10116228.
    KEGGimci:Mesci_0783.
    PATRICi45251417. VBIMesCic160642_1211.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002447 Genomic DNA. Translation: ADV09952.1 .
    RefSeqi YP_004140002.1. NC_014923.1.

    3D structure databases

    ProteinModelPortali E8TFS2.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADV09952 ; ADV09952 ; Mesci_0783 .
    GeneIDi 10116228.
    KEGGi mci:Mesci_0783.
    PATRICi 45251417. VBIMesCic160642_1211.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SACDMAL.

    Enzyme and pathway databases

    BioCyci MCIC765698:GHQ5-789-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Mesorhizobium ciceri bv. biserrulae WSM1271."
      Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Nandasena K., Reeve W.G., Howieson J.G., O'Hara G., Tiwari R.P., Woyke T.
      Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HAMBI 2942 / LMG 23838 / WSM1271Imported.

    Entry informationi

    Entry nameiE8TFS2_MESCW
    AccessioniPrimary (citable) accession number: E8TFS2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 5, 2011
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3