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Protein
Submitted name:

DNA ligase D

Gene

Mesci_0783

Organism
Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMCIC765698:GHQ5-789-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Mesci_0783Imported
OrganismiMesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)Imported
Taxonomic identifieri765698 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium
ProteomesiUP000007471 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi765698.Mesci_0783.

Structurei

3D structure databases

ProteinModelPortaliE8TFS2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiYARKRDF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E8TFS2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASLEQYHSK RDFKKTAEPA GKVARTKQGE AGGIFVIHKH AATRLHYDLR
60 70 80 90 100
LEHDGVLWSW AVTRGPSLDP HEKRLAVHVE DHPIDYAPFE GTIPKGEYGG
110 120 130 140 150
GSVIVWDEGT WIPEIDPAKA MKKGHISFEL RGHKLHGAWH LVRLKPRAGE
160 170 180 190 200
KRDNWLLIKS DDAAARPGED ILKEAPESVK SGLTIEEVGE GKTAKGEKPK
210 220 230 240 250
VWHSNKPAAV KTKAGKRLDF IEPQLATLER DAPPGKDWLH EVKFDGYRMQ
260 270 280 290 300
AQIAGTDVRL LTRTGLDWTK KFGGEIVAEL AGLKCSDAIL DGEVVVLADS
310 320 330 340 350
GVSSFALLQQ DLSAKRTNRF IYYVFDLMRL DGRDLRREPL VERKQALQEL
360 370 380 390 400
LGEHSDNAAV RFSDHFAEPG KIMLEHACRM GLEGVVSKRA DAPYRSGRGP
410 420 430 440 450
TWVKSKCTAR QEFVIGGYLP SDKTGRGLRS ILVGFHEGGK LHYAGRVGTG
460 470 480 490 500
FSGKGANELK AKLDALTAKS SPFSTAVPKG KGLVWVKPEL VGEVEFRSWT
510 520 530 540 550
SDRIIRHASF QGLREDKPAE EVVQEKPKAA TGMPSTGKST AKPASGGKAA
560 570 580 590 600
GSMTTTVKLS HPDKLLWPDE NISKQGLLDH YAQVWPRMEQ FVVNRPLSLV
610 620 630 640 650
RAPDGVGGQR FFQKHASAGM SDKIARMKDP TDGEEILFIR DFDGVAALVQ
660 670 680 690 700
YGVVEIHIWG CTIDEIEKPD QIIFDLDPDE GVDVKAVREA ALDIRGKLDE
710 720 730 740 750
LSLPNFVKTS GGKGYHVLVP LKPAADWDAV KGFAHDFARA LEQGAPDRYT
760 770 780 790 800
ATLSKKARTG KIFVDYLRNG RGSTTVAPYS SRAKKGATVS MPVTWPEIEA
810 820 830
GLPPNAFPIG DKTTLKQLAK ADPWREFFKQ GKTLKRG
Length:837
Mass (Da):92,161
Last modified:April 5, 2011 - v1
Checksum:iB1C76C12ED036C2E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002447 Genomic DNA. Translation: ADV09952.1.
RefSeqiWP_013528647.1. NC_014923.1.
YP_004140002.1. NC_014923.1.

Genome annotation databases

EnsemblBacteriaiADV09952; ADV09952; Mesci_0783.
GeneIDi10116228.
KEGGimci:Mesci_0783.
PATRICi45251417. VBIMesCic160642_1211.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002447 Genomic DNA. Translation: ADV09952.1.
RefSeqiWP_013528647.1. NC_014923.1.
YP_004140002.1. NC_014923.1.

3D structure databases

ProteinModelPortaliE8TFS2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi765698.Mesci_0783.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADV09952; ADV09952; Mesci_0783.
GeneIDi10116228.
KEGGimci:Mesci_0783.
PATRICi45251417. VBIMesCic160642_1211.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.
OMAiYARKRDF.

Enzyme and pathway databases

BioCyciMCIC765698:GHQ5-789-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Mesorhizobium ciceri bv. biserrulae WSM1271."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Nandasena K., Reeve W.G., Howieson J.G., O'Hara G., Tiwari R.P., Woyke T.
    Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HAMBI 2942 / LMG 23838 / WSM1271Imported.

Entry informationi

Entry nameiE8TFS2_MESCW
AccessioniPrimary (citable) accession number: E8TFS2
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: July 22, 2015
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.