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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Mesci_5469

Organism
Mesorhizobium ciceri biovar biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMCIC765698:GHQ5-5531-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Mesci_5469Imported
OrganismiMesorhizobium ciceri biovar biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)Imported
Taxonomic identifieri765698 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium
ProteomesiUP000007471 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi765698.Mesci_5469.

Structurei

3D structure databases

ProteinModelPortaliE8TEF1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini27 – 207181DNA_ligase_A_MInterPro annotationAdd
BLAST
Domaini226 – 325100DNA_ligase_A_CInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiCOG1793. LUCA.
ENOG4105GN4. Bacteria.
HOGENOMiHOG000222508.
OMAiKPMTRYF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

E8TEF1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHEPTNAFPL PLDTSPMEAR LADAIPRDGN RWQYEPKWDG FRCLAFKSDD
60 70 80 90 100
TVDLRAKSGK PLGRYFPEIT EILRDLKRGH FVIDGEIVIE VDGELSFEAL
110 120 130 140 150
QMRLHPAQSR IRKLSSQTPA SLILFDMLAR PGGEVITGKP LVERRRAIED
160 170 180 190 200
FVTSSNSPDL RLSKCTYDAA TAARWLNGAG HASTDGIVAK VLDEHYLCGE
210 220 230 240 250
RAMVKVKPRR TADCVVGGFR YLAGSREVGS LLLGLYNDDG KLDHVGFTST
260 270 280 290 300
IARTDRGALT RRLEGLRSEP GFTGKAPGGP SRWSTERSGQ WEPLEPELVV
310 320 330
EVRFDHVTGN RFRHGTKLLR WRPDKAPRQC TFEQIE
Length:336
Mass (Da):37,654
Last modified:April 5, 2011 - v1
Checksum:iBF7104515EC8D7F2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002447 Genomic DNA. Translation: ADV14566.1.
RefSeqiWP_013533217.1. NC_014923.1.
YP_004144616.1. NC_014923.1.

Genome annotation databases

EnsemblBacteriaiADV14566; ADV14566; Mesci_5469.
GeneIDi10120969.
KEGGimci:Mesci_5469.
PATRICi45261192. VBIMesCic160642_6005.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002447 Genomic DNA. Translation: ADV14566.1.
RefSeqiWP_013533217.1. NC_014923.1.
YP_004144616.1. NC_014923.1.

3D structure databases

ProteinModelPortaliE8TEF1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi765698.Mesci_5469.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADV14566; ADV14566; Mesci_5469.
GeneIDi10120969.
KEGGimci:Mesci_5469.
PATRICi45261192. VBIMesCic160642_6005.

Phylogenomic databases

eggNOGiCOG1793. LUCA.
ENOG4105GN4. Bacteria.
HOGENOMiHOG000222508.
OMAiKPMTRYF.

Enzyme and pathway databases

BioCyciMCIC765698:GHQ5-5531-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Mesorhizobium ciceri bv. biserrulae WSM1271."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Nandasena K., Reeve W.G., Howieson J.G., O'Hara G., Tiwari R.P., Woyke T.
    Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HAMBI 2942 / LMG 23838 / WSM1271Imported.

Entry informationi

Entry nameiE8TEF1_MESCW
AccessioniPrimary (citable) accession number: E8TEF1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: December 9, 2015
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.