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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Mesci_3891

Organism
Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMCIC765698:GHQ5-3941-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Mesci_3891Imported
OrganismiMesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)Imported
Taxonomic identifieri765698 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesPhyllobacteriaceaeMesorhizobium
ProteomesiUP000007471 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE8T8V9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
OMAiLYTRHNN.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E8T8V9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLKFIEPLM PTLVDRPPEG GDWIHEVKFD GYRSQMIIDE GGARIFTRRG
60 70 80 90 100
LDWSSKYRDL AAAAALLNVE NAIIDGEIIV LNAAGLSDFA ELRKAITRRQ
110 120 130 140 150
HDLYFVAFDL LHLNGHDLCD MALEDRREIL EGMIPPDIRI QFSQALPGEA
160 170 180 190 200
SAVYHLVDQA GLEGMVSKRR DSKYRSGPST SWLKVKCFAV GEFDLLGVER
210 220 230 240 250
EAGKPAFALM AERGTGRYVG SAFITLNREL RERLWKRVQE HAGPPPQGIK
260 270 280
RPATQWVKPG LIGRVKHLRG EEDLRHASLQ DFREEP
Length:286
Mass (Da):32,325
Last modified:April 5, 2011 - v1
Checksum:i30C58EECC8FC3935
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002447 Genomic DNA. Translation: ADV13007.1.
RefSeqiWP_013531673.1. NC_014923.1.
YP_004143057.1. NC_014923.1.

Genome annotation databases

EnsemblBacteriaiADV13007; ADV13007; Mesci_3891.
GeneIDi10119379.
KEGGimci:Mesci_3891.
PATRICi45257898. VBIMesCic160642_4383.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002447 Genomic DNA. Translation: ADV13007.1.
RefSeqiWP_013531673.1. NC_014923.1.
YP_004143057.1. NC_014923.1.

3D structure databases

ProteinModelPortaliE8T8V9.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADV13007; ADV13007; Mesci_3891.
GeneIDi10119379.
KEGGimci:Mesci_3891.
PATRICi45257898. VBIMesCic160642_4383.

Phylogenomic databases

HOGENOMiHOG000222509.
OMAiLYTRHNN.

Enzyme and pathway databases

BioCyciMCIC765698:GHQ5-3941-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Mesorhizobium ciceri bv. biserrulae WSM1271."
    Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Teshima H., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Nandasena K., Reeve W.G., Howieson J.G., O'Hara G., Tiwari R.P., Woyke T.
    Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HAMBI 2942 / LMG 23838 / WSM1271Imported.

Entry informationi

Entry nameiE8T8V9_MESCW
AccessioniPrimary (citable) accession number: E8T8V9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: April 29, 2015
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.