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E8SJ17 (E8SJ17_STAPH) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
50S ribosomal protein L1 HAMAP-Rule MF_01318
Gene names
Name:rplA HAMAP-Rule MF_01318
Ordered Locus Names:SPSINT_0212 EMBL ADV04741.1
OrganismStaphylococcus pseudintermedius (strain HKU10-03) [Complete proteome] [HAMAP] EMBL ADV04741.1
Taxonomic identifier937773 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesStaphylococcus

Protein attributes

Sequence length231 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release By similarity. HAMAP-Rule MF_01318

Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA By similarity. HAMAP-Rule MF_01318

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01318

Sequence similarities

Belongs to the ribosomal protein L1P family. HAMAP-Rule MF_01318

Sequences

Sequence LengthMass (Da)Tools
E8SJ17 [UniParc].

Last modified April 5, 2011. Version 1.
Checksum: 5D9B8DDFAF984946

FASTA23125,001
        10         20         30         40         50         60 
MAKKGKKYQE ALNKVDRQAL YTVEEAIRLA QETSIANFDA SVEVAFRLGI DTRKNDQQIR 

        70         80         90        100        110        120 
GAVVLPHGTG KSQRVLVFAK GDKIAEAEAA GADYVGDAEY VNKIQQGWFD FDVVVATPDM 

       130        140        150        160        170        180 
MGEVGKLGRV LGPKGLMPNP KTGTVTMDVK KAVEEIKAGK VEYRAEKAGI VHASIGKVSF 

       190        200        210        220        230 
ETEKLVENFK TLQDVLTKAK PSSAKGTYFK SVAVTTTMGP GIKVDTATFK L 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Staphylococcus pseudintermedius."
Tse H., Tsoi H.W., Leung S.P., Urquhart I.J., Lau S.K.P., Woo P.C.Y., Yuen K.Y.
Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: HKU10-03.
[2]"Complete genome sequence of the veterinary pathogen Staphylococcus pseudintermedius strain HKU10-03, isolated in a case of canine pyoderma."
Tse H., Tsoi H.W., Leung S.P., Urquhart I.J., Lau S.K., Woo P.C., Yuen K.Y.
J. Bacteriol. 193:1783-1784(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HKU10-03 EMBL ADV04741.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002439 Genomic DNA. Translation: ADV04741.1.
RefSeqYP_004148377.1. NC_014925.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADV04741; ADV04741; SPSINT_0212.
GeneID10134971.
KEGGssd:SPSINT_0212.
PATRIC45363607. VBIStaPse177932_0211.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000207015.
KOK02863.

Enzyme and pathway databases

BioCycSPSE937773:GH0P-232-MONOMER.

Family and domain databases

Gene3D3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
HAMAPMF_01318_B. Ribosomal_L1_B.
InterProIPR005878. Ribosom_L1_bac-type.
IPR002143. Ribosomal_L1.
IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
[Graphical view]
PfamPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMSSF56808. SSF56808. 1 hit.
TIGRFAMsTIGR01169. rplA_bact. 1 hit.
PROSITEPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE8SJ17_STAPH
AccessionPrimary (citable) accession number: E8SJ17
Entry history
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: February 19, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)