E8SJ17 (E8SJ17_STAPH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L1 HAMAP-Rule MF_01318

Gene names

Name:	rplA HAMAP-Rule MF_01318
Ordered Locus Names:	SPSINT_0212

Organism

Staphylococcus pseudintermedius (strain HKU10-03) [Complete proteome] [HAMAP] EMBL ADV04741.1

Taxonomic identifier

937773 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Staphylococcaceae › Staphylococcus › Staphylococcus pseudintermedius

Protein attributes

Sequence length	231 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release By similarity. HAMAP-Rule MF_01318 Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA By similarity. HAMAP-Rule MF_01318
Subunit structure	Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01318
Sequence similarities	Belongs to the ribosomal protein L1P family. HAMAP-Rule MF_01318

Ontologies

Keywords
Biological process	Translation regulation HAMAP-Rule MF_01318
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_01318 tRNA-binding HAMAP-Rule MF_01318
Molecular function	Repressor HAMAP-Rule MF_01318 Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_01318 EMBL ADV04741.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	regulation of translation Inferred from electronic annotation. Source: UniProtKB-KW translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	large ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E8SJ17 [UniParc]. Last modified April 5, 2011. Version 1. Checksum: 5D9B8DDFAF984946	FASTA	231	25,001
	10 20 30 40 50 60 MAKKGKKYQE ALNKVDRQAL YTVEEAIRLA QETSIANFDA SVEVAFRLGI DTRKNDQQIR 70 80 90 100 110 120 GAVVLPHGTG KSQRVLVFAK GDKIAEAEAA GADYVGDAEY VNKIQQGWFD FDVVVATPDM 130 140 150 160 170 180 MGEVGKLGRV LGPKGLMPNP KTGTVTMDVK KAVEEIKAGK VEYRAEKAGI VHASIGKVSF 190 200 210 220 230 ETEKLVENFK TLQDVLTKAK PSSAKGTYFK SVAVTTTMGP GIKVDTATFK L

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of Staphylococcus pseudintermedius." Tse H., Tsoi H.W., Leung S.P., Urquhart I.J., Lau S.K.P., Woo P.C.Y., Yuen K.Y. Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: HKU10-03.
[2]	"Complete genome sequence of the veterinary pathogen Staphylococcus pseudintermedius strain HKU10-03, isolated in a case of canine pyoderma." Tse H., Tsoi H.W., Leung S.P., Urquhart I.J., Lau S.K., Woo P.C., Yuen K.Y. J. Bacteriol. 193:1783-1784(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HKU10-03.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002439 Genomic DNA. Translation: ADV04741.1.
RefSeq	YP_004148377.1. NC_014925.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADV04741; ADV04741; SPSINT_0212.
GeneID	10134971.
KEGG	ssd:SPSINT_0212.
PATRIC	45363607. VBIStaPse177932_0211.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000207015.
KO	K02863.
Family and domain databases
Gene3D	3.30.190.20. 2 hits. 3.40.50.790. 1 hit.
HAMAP	MF_01318_B. Ribosomal_L1_B.
InterPro	IPR005878. Ribosom_L1_bac-type. IPR002143. Ribosomal_L1. IPR016094. Ribosomal_L1_2-a/b-sand. IPR016095. Ribosomal_L1_3-a/b-sand. IPR023673. Ribosomal_L1_CS. IPR023674. Ribosomal_L1_SF. [Graphical view]
Pfam	PF00687. Ribosomal_L1. 1 hit. [Graphical view]
PIRSF	PIRSF002155. Ribosomal_L1. 1 hit.
SUPFAM	SSF56808. Ribosomal_L1. 1 hit.
TIGRFAMs	TIGR01169. rplA_bact. 1 hit.
PROSITE	PS01199. RIBOSOMAL_L1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E8SJ17_STAPH

Accession

Primary (citable) accession number: E8SJ17

Entry history

Integrated into UniProtKB/TrEMBL:	April 5, 2011
Last sequence update:	April 5, 2011
Last modified:	May 1, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)