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E8SJ17

- E8SJ17_STAPH

UniProt

E8SJ17 - E8SJ17_STAPH

Protein

50S ribosomal protein L1

Gene

rplA

Organism
Staphylococcus pseudintermedius (strain HKU10-03)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 21 (01 Oct 2014)
      Sequence version 1 (05 Apr 2011)
      Previous versions | rss
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    Functioni

    Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.UniRule annotation
    Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. regulation of translation Source: UniProtKB-KW
    2. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    RepressorUniRule annotation, Ribonucleoprotein, Ribosomal proteinUniRule annotationImported

    Keywords - Biological processi

    Translation regulationUniRule annotation

    Keywords - Ligandi

    RNA-binding, rRNA-bindingUniRule annotation, tRNA-bindingUniRule annotation

    Enzyme and pathway databases

    BioCyciSPSE937773:GH0P-232-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L1UniRule annotation
    Gene namesi
    Name:rplAUniRule annotation
    Ordered Locus Names:SPSINT_0212Imported
    OrganismiStaphylococcus pseudintermedius (strain HKU10-03)Imported
    Taxonomic identifieri937773 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcus
    ProteomesiUP000007469: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. large ribosomal subunit Source: InterPro

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L1P family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000207015.
    KOiK02863.

    Family and domain databases

    Gene3Di3.30.190.20. 2 hits.
    3.40.50.790. 1 hit.
    HAMAPiMF_01318_B. Ribosomal_L1_B.
    InterProiIPR005878. Ribosom_L1_bac-type.
    IPR002143. Ribosomal_L1.
    IPR023674. Ribosomal_L1-like.
    IPR028364. Ribosomal_L1/biogenesis.
    IPR016094. Ribosomal_L1_2-a/b-sand.
    IPR016095. Ribosomal_L1_3-a/b-sand.
    IPR023673. Ribosomal_L1_CS.
    [Graphical view]
    PfamiPF00687. Ribosomal_L1. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002155. Ribosomal_L1. 1 hit.
    SUPFAMiSSF56808. SSF56808. 1 hit.
    TIGRFAMsiTIGR01169. rplA_bact. 1 hit.
    PROSITEiPS01199. RIBOSOMAL_L1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    E8SJ17-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKKGKKYQE ALNKVDRQAL YTVEEAIRLA QETSIANFDA SVEVAFRLGI    50
    DTRKNDQQIR GAVVLPHGTG KSQRVLVFAK GDKIAEAEAA GADYVGDAEY 100
    VNKIQQGWFD FDVVVATPDM MGEVGKLGRV LGPKGLMPNP KTGTVTMDVK 150
    KAVEEIKAGK VEYRAEKAGI VHASIGKVSF ETEKLVENFK TLQDVLTKAK 200
    PSSAKGTYFK SVAVTTTMGP GIKVDTATFK L 231
    Length:231
    Mass (Da):25,001
    Last modified:April 5, 2011 - v1
    Checksum:i5D9B8DDFAF984946
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002439 Genomic DNA. Translation: ADV04741.1.
    RefSeqiYP_004148377.1. NC_014925.1.

    Genome annotation databases

    EnsemblBacteriaiADV04741; ADV04741; SPSINT_0212.
    GeneIDi10134971.
    KEGGissd:SPSINT_0212.
    PATRICi45363607. VBIStaPse177932_0211.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP002439 Genomic DNA. Translation: ADV04741.1 .
    RefSeqi YP_004148377.1. NC_014925.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADV04741 ; ADV04741 ; SPSINT_0212 .
    GeneIDi 10134971.
    KEGGi ssd:SPSINT_0212.
    PATRICi 45363607. VBIStaPse177932_0211.

    Phylogenomic databases

    HOGENOMi HOG000207015.
    KOi K02863.

    Enzyme and pathway databases

    BioCyci SPSE937773:GH0P-232-MONOMER.

    Family and domain databases

    Gene3Di 3.30.190.20. 2 hits.
    3.40.50.790. 1 hit.
    HAMAPi MF_01318_B. Ribosomal_L1_B.
    InterProi IPR005878. Ribosom_L1_bac-type.
    IPR002143. Ribosomal_L1.
    IPR023674. Ribosomal_L1-like.
    IPR028364. Ribosomal_L1/biogenesis.
    IPR016094. Ribosomal_L1_2-a/b-sand.
    IPR016095. Ribosomal_L1_3-a/b-sand.
    IPR023673. Ribosomal_L1_CS.
    [Graphical view ]
    Pfami PF00687. Ribosomal_L1. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002155. Ribosomal_L1. 1 hit.
    SUPFAMi SSF56808. SSF56808. 1 hit.
    TIGRFAMsi TIGR01169. rplA_bact. 1 hit.
    PROSITEi PS01199. RIBOSOMAL_L1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Staphylococcus pseudintermedius."
      Tse H., Tsoi H.W., Leung S.P., Urquhart I.J., Lau S.K.P., Woo P.C.Y., Yuen K.Y.
      Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: HKU10-03.
    2. "Complete genome sequence of the veterinary pathogen Staphylococcus pseudintermedius strain HKU10-03, isolated in a case of canine pyoderma."
      Tse H., Tsoi H.W., Leung S.P., Urquhart I.J., Lau S.K., Woo P.C., Yuen K.Y.
      J. Bacteriol. 193:1783-1784(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HKU10-03Imported.

    Entry informationi

    Entry nameiE8SJ17_STAPH
    AccessioniPrimary (citable) accession number: E8SJ17
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 5, 2011
    Last sequence update: April 5, 2011
    Last modified: October 1, 2014
    This is version 21 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3