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E8RPE4 (E8RPE4_ASTEC) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D EMBL ADU13042.1
Gene names
Ordered Locus Names:Astex_1372 EMBL ADU13042.1
OrganismAsticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) [Complete proteome] [HAMAP] EMBL ADU13042.1
Taxonomic identifier573065 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Caulobacterales › Caulobacteraceae › Asticcacaulis ›

Protein attributes

Sequence length847 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADU13042.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
E8RPE4 [UniParc].

Last modified April 5, 2011. Version 1.
Checksum: 03F931FE7EFC5518

FASTA84794,873
        10         20         30         40         50         60 
MGLDLYNKKR DFAKTAEPEG KPGRKSGQRF LIQKHDARRL HYDFRLELDG VLKSWAVTRG 

        70         80         90        100        110        120 
PSPNPQDKRL AVEVEDHPVA YGTFEGIIPK GQYGGGTVMM WDEGTWEPLD DPHKGLKAGS 

       130        140        150        160        170        180 
LKFVLHGKRL SGEWALVRMK PRPKGPDRAN WLLIKHDDAA ARDDAAEAWL ETQATSITTG 

       190        200        210        220        230        240 
RRMEEIATNT QRVWTSRTRD EPPKRKQSKS MLEFIEPELA TLAVAVPKGK DWVHEIKFDG 

       250        260        270        280        290        300 
YRTQALIENG EVRLLTRTGL DWTHRFRPLP DYLAQMPVTS AILDGEIVAV DEGGRADFKT 

       310        320        330        340        350        360 
LQATLAGEAD VPLQFYVFDL LHSDGEDLRA LPLVSRKARL QRLFNGNHFG GRVHYSEHFT 

       370        380        390        400        410        420 
KDAADLKDRL CALDQEGLIC KRANAPYHSG RNRAWLKVKC HKRQEFVIGG FTLPKAGSKG 

       430        440        450        460        470        480 
IGALLIGYFQ EGRLTYAGKV GTGFTLDSAI DLRRRLDLIA QKYHPFSDIP PEFKRGAHWV 

       490        500        510        520        530        540 
APHLVAEVQF GEWTSDGRLR HPSFQGLRED KPPQDIHRDR PLSPTEVRKA EDVPAARKPK 

       550        560        570        580        590        600 
RRAPASEKSP TDVVGGVAIS SPDRVVFPGT DITKKDVAEY YLSVADHILP HIAGRPISTI 

       610        620        630        640        650        660 
RCPQGIGGQC FFQRHLTQAA IPHVNDTGLP VNGREDDYIM ITDAHGLISL MQWGVMEIHP 

       670        680        690        700        710        720 
RGCMATTPNR PDRLIFDLDP DPEADWADVV AGAAEVRERM TEFDLQSFLK TTGGKGLHVV 

       730        740        750        760        770        780 
IPIQPQYDWS AIKAFTRAVA ESMTHDSPRR FVAQASKSKR KGRVFIDYLR NDFTATAVAP 

       790        800        810        820        830        840 
YAVRARPGAP VAMPIDWKAL SRDLDPAGFT LENTPAHLGR RKADPWADMA RMNQRLSPKI 


LKALNII

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References

[1]"Complete sequence of chromosome 1 of Asticcacaulis excentricus CB 48."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Bruce D., Goodwin L., Pitluck S., Teshima H., Davenport K., Detter J.C., Han C., Tapia R., Land M., Hauser L., Jeffries C., Kyrpides N., Ivanova N., Ovchinnikova G., Brun Y.V., Woyke T.
Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP002395 Genomic DNA. Translation: ADU13042.1.
RefSeqYP_004087193.1. NC_014816.1.

3D structure databases

ProteinModelPortalE8RPE4.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADU13042; ADU13042; Astex_1372.
GeneID10052938.
KEGGaex:Astex_1372.
PATRIC45150705. VBIAstExc23432_1346.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.

Enzyme and pathway databases

BioCycAEXC573065:GJ7A-1389-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameE8RPE4_ASTEC
AccessionPrimary (citable) accession number: E8RPE4
Entry history
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: April 3, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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