E8R149 (E8R149_ISOPI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Isocitrate dehydrogenase EMBL ADV63400.1
EC=1.1.1.42 EMBL ADV63400.1

Gene names

Ordered Locus Names:

Isop_2834 EMBL ADV63400.1

Organism

Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) [Complete proteome] [HAMAP] EMBL ADV63400.1

Taxonomic identifier

575540 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Planctomycetes › Planctomycetia › Planctomycetales › Planctomycetaceae › Isosphaera › Isosphaera pallida

Protein attributes

Sequence length	499 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the isocitrate and isopropylmalate dehydrogenases family. RuleBase RU004443

Ontologies

Keywords
Molecular function	Oxidoreductase RuleBase RU004444 EMBL ADV63400.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glyoxylate cycle Inferred from electronic annotation. Source: InterPro tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular_function	NAD binding Inferred from electronic annotation. Source: InterPro isocitrate dehydrogenase (NADP+) activity Inferred from electronic annotation. Source: EC magnesium ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E8R149 [UniParc]. Last modified April 5, 2011. Version 1. Checksum: 7E0177102D3923A2	FASTA	499	54,375
	10 20 30 40 50 60 MGIPITVAYG DGIGPEIMAA TLIVLKEAGA DLEPEVIEIG ESIYQRGVSS GIEPTSWESL 70 80 90 100 110 120 RRTGVFLKSP VTTPQGGGFK SLNVTIRKGL GLYANVRPCQ AYAPFVRTLH PRMDLVIIRE 130 140 150 160 170 180 NEEDLYAGIE HRQTDEVMQC LKLISRPGCE RIVRYAFEFA RAHGRTKVTC MTKDNIMKLT 190 200 210 220 230 240 DGLFHQVFDE IGRDYPELKQ DHLIIDIGAA RLADTPEIFD VIVTPNLYGD ILSDIAAQVA 250 260 270 280 290 300 GSVGLAGSAN IGDHGAMFEA IHGSAPTIAG KNLANPSGLL QAAVMMLVHL GLGELATTIR 310 320 330 340 350 360 NAWLRTLEDG LHTADIAGTL TKTTVGTLEF AQAVVERLGQ RPERLKPASF EADNPDPIPA 370 380 390 400 410 420 PAHPPSLTRA PAPSPAAALP AYRRAPETSK TLVGVDLFLN WREGSPEDLG RTLSKSATPK 430 440 450 460 470 480 LTLCMITNRG VKVWPNGLPE TFCTDHWRCR FMSERQEPID HRDILELYQR VIQSGFDVIK 490 TENLCLFDGV PGFALGQGQ

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete sequence of chromosome of Isophaera pallida ATCC 43644." US DOE Joint Genome Institute (JGI-PGF) Lucas S., Copeland A., Lapidus A., Bruce D., Goodwin L., Pitluck S., Kyrpides N., Mavromatis K., Pagani I., Ivanova N., Saunders E., Brettin T., Detter J.C., Han C., Tapia R., Land M., Hauser L., Markowitz V. , Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Eisen J.A. Submitted (NOV-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 43644.
[2]	"Complete genome sequence of Isosphaera pallida type strain (IS1B)." US DOE Joint Genome Institute (JGI-PGF) Goker M., Cleland D., Saunders E., Lapidus A., Nolan M., Lucas S., Hammon N., Deshpande S., Cheng J.F., Tapia R., Han C., Goodwin L., Pitluck S., Liolios K., Pagani I., Ivanova N., Mavromatis K., Pati A. , Chen A., Palaniappan K., Land M., Hauser L., Chang Y.J., Jeffries C.D., Detter J.C., Beck B., Woyke T., Bristow J., Eisen J.A., Markowitz V., Hugenholtz P., Kyrpides N.C., Klenk H.P. Stand. Genomic Sci. 4:63-71(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43644 / DSM 9630 / IS1B.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002353 Genomic DNA. Translation: ADV63400.1.
RefSeq	YP_004179949.1. NC_014962.1.
3D structure databases
ProteinModelPortal	E8R149.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADV63400; ADV63400; Isop_2834.
GeneID	10156976.
KEGG	ipa:Isop_2834.
PATRIC	46960370. VBIIsoPal14453_3656.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000021113.
KO	K00031.
Enzyme and pathway databases
BioCyc	IPAL575540:GI5T-2877-MONOMER.
Family and domain databases
Gene3D	3.40.718.10. 1 hit.
InterPro	IPR019818. IsoCit/isopropylmalate_DH_CS. IPR001804. Isocitrate/isopropylmalate_DH. IPR014273. Isocitrate_DH_aproteobac-typ. IPR024084. IsoPropMal-DH-like_dom. [Graphical view]
PANTHER	PTHR11835. PTHR11835. 1 hit.
Pfam	PF00180. Iso_dh. 1 hit. [Graphical view]
TIGRFAMs	TIGR02924. ICDH_alpha. 1 hit.
PROSITE	PS00470. IDH_IMDH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

E8R149_ISOPI

Accession

Primary (citable) accession number: E8R149

Entry history

Integrated into UniProtKB/TrEMBL:	April 5, 2011
Last sequence update:	April 5, 2011
Last modified:	May 1, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)