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Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Yersinia pestis bv. Medievalis (strain Harbin 35)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Cu cationUniRule annotationNote: Binds 1 copper ion per subunit.UniRule annotation
  • Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Enzyme and pathway databases

BioCyciYPES547048:GLMW-3549-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodCImported
Ordered Locus Names:YPC_3699Imported
OrganismiYersinia pestis bv. Medievalis (strain Harbin 35)Imported
Taxonomic identifieri547048 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
ProteomesiUP000008088: Chromosome

Structurei

3D structure databases

ProteinModelPortaliE8P0K0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04565.
OMAiGKCEPPF.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E8P0K0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKLSTLLLPV ILYSSATLAA NMAGMNDKAS MNDKASMNDM ASMNGKASMT
60 70 80 90 100
VKINESLPQG NGKALGTVTV TETAYGLLFT PHLTGLAPGI HGFHLHEKPS
110 120 130 140 150
CAPGMKDGKA VPALAAGGHL DPNKTGVHLG PYNDKGHLGD LPGLVVNADG
160 170 180 190 200
TATYPVLAPR LKSLSEVKQH ALMIHAGGDN YSDHPMPLGG GGARMACGVI

E
Length:201
Mass (Da):20,675
Last modified:April 5, 2011 - v1
Checksum:i75D25ABE48BF8DCD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001608 Genomic DNA. Translation: ADW00145.1.
RefSeqiYP_005625431.1. NC_017265.1.

Genome annotation databases

EnsemblBacteriaiADW00145; ADW00145; YPC_3699.
GeneIDi12276328.
KEGGiyph:YPC_3699.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001608 Genomic DNA. Translation: ADW00145.1.
RefSeqiYP_005625431.1. NC_017265.1.

3D structure databases

ProteinModelPortaliE8P0K0.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADW00145; ADW00145; YPC_3699.
GeneIDi12276328.
KEGGiyph:YPC_3699.

Phylogenomic databases

KOiK04565.
OMAiGKCEPPF.

Enzyme and pathway databases

BioCyciYPES547048:GLMW-3549-MONOMER.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Yersinia pestis Harbin 35, complete genome."
    Plunkett G.III., Anderson B.D., Baumler D.J., Burland V., Cabot E.L., Glasner J.D., Mau B., Neeno-Eckwall E., Perna N.T., Munk A.C., Han C.S., Bruce D.C., Detter J.C., Tapia R., Brettin T.S., Mane S.P., Sobral B.W.
    Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Harbin 35Imported.

Entry informationi

Entry nameiE8P0K0_YERPH
AccessioniPrimary (citable) accession number: E8P0K0
Entry historyi
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: January 7, 2015
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.