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E8MS60 (E8MS60_BIFL1) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein attributes

Sequence length691 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Ontologies

Keywords
   Molecular functionGlycosidase PIRNR PIRNR001084
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processgalactose metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentbeta-galactosidase complex

Inferred from electronic annotation. Source: InterPro

   Molecular_functionbeta-galactosidase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1601Proton donor By similarity PIRSR PIRSR001084-1
Active site3181Nucleophile By similarity PIRSR PIRSR001084-1
Binding site1211Substrate By similarity PIRSR PIRSR001084-2
Binding site1591Substrate By similarity PIRSR PIRSR001084-2
Binding site3261Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
E8MS60 [UniParc].

Last modified April 5, 2011. Version 1.
Checksum: 7A3FE4E07541D4BF

FASTA69177,545
        10         20         30         40         50         60 
MERKEFKWPQ PLAGNEPRIW YGGDYNPDQW PEEVWDEDIE LMQQAGVNLV SVAIFSWAKL 

        70         80         90        100        110        120 
EPEEGVYDFD WLDRVIDKLG KAGIAVDLAS GTASPPMWMT QAHPEILWVD YRGDVCQPGA 

       130        140        150        160        170        180 
RQHWRATSPV FLDYALNLCR KMAEHYKDNP YVVSWHVSNE YGCHNRFDYS EDAERAFQKW 

       190        200        210        220        230        240 
CEKKYGTIDA VNDAWGTAFW AQRMNNFSEI IPPRFIGDGN FMNPGKLLDW KRFSSDALLD 

       250        260        270        280        290        300 
FYKAERDALL EIAPKPQTTN FMVSAGGTGI DYDKWGYDVD FVSNDHYFTP GEAHFDELAY 

       310        320        330        340        350        360 
SASLCDGIAR KNPWFLMEHS SSAVNWRPIN YRVEPGELVR DSLAHLAMGS DAICYFQWRQ 

       370        380        390        400        410        420 
SKAGAEKWHS SMVPHAGPDS QIFRDVCELG ADLNKLADEG LLSTKLVKSK VAVVFDYESQ 

       430        440        450        460        470        480 
WATEHTATPT QEVRHWTEPL AWFRALADNG LTADVVPVRG PWDEYEAVVL PSLTILSEET 

       490        500        510        520        530        540 
TRRVREYVAN GGKLFVTYYT GLVDDKDHVW LGGYPGSIRD VVGVRVEEFA PMGNDFPGAM 

       550        560        570        580        590        600 
DHLDLDNGTV AHDFADVITS VADTAHVVAS FKADKWTGFD GAPAITVNDF GDGKAAYVGA 

       610        620        630        640        650        660 
RLGREGLAKS LPVLLEELGI ETSAEDDRGE VLRVERADET GENHFVFLFN RTHDVAVVDV 

       670        680        690 
EGEPLVASLA QVNESEHTAA IQPNGVLVVK L 

« Hide

References

[1]"Bifidobacteria can protect from enteropathogenic infection through production of acetate."
Fukuda S., Toh H., Hase K., Oshima K., Nakanishi Y., Yoshimura K., Tobe T., Clarke J.M., Topping D.L., Suzuki T., Taylor T.D., Itoh K., Kikuchi J., Morita H., Hattori M., Ohno H.
Nature 469:543-547(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 157F EMBL BAJ70604.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP010890 Genomic DNA. Translation: BAJ70604.1.
RefSeqYP_004208382.1. NC_015052.1.

3D structure databases

ProteinModelPortalE8MS60.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAJ70604; BAJ70604; BLIF_0460.
GeneID10207151.
KEGGblf:BLIF_0460.
PATRIC46884883. VBIBifLon182273_0472.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000117811.
KOK12308.
OMALFDWENW.

Enzyme and pathway databases

BioCycBLON565040:GHFW-475-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
3.40.50.880. 1 hit.
InterProIPR013739. Beta_galactosidase_C.
IPR013738. Beta_galactosidase_Trimer.
IPR029062. Class_I_gatase-like.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08533. Glyco_hydro_42C. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
SSF52317. SSF52317. 1 hit.
ProtoNetSearch...

Entry information

Entry nameE8MS60_BIFL1
AccessionPrimary (citable) accession number: E8MS60
Entry history
Integrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: July 9, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)