E7F0X6 (E7F0X6_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Structural maintenance of chromosomes protein PIRNR PIRNR005719

Gene names

Name:

smc1a Ensembl ENSDARP00000072610 ZFIN ZDB-GENE-090506-9

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome] Ensembl ENSDARP00000072610

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	1232 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Subcellular location	Nucleus By similarity PIRNR PIRNR005719.
Sequence similarities	Belongs to the SMC family. PIRNR PIRNR005719

Ontologies

Keywords
Cellular component	Nucleus PIRNR PIRNR005719
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro chromosome condensation Inferred from electronic annotation. Source: InterPro sister chromatid cohesion Inferred from electronic annotation. Source: InterPro
Cellular_component	chromosome Inferred from electronic annotation. Source: InterPro nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	E7F0X6 [UniParc]. Last modified March 8, 2011. Version 1. Checksum: A21771BDF0D3EEC7	FASTA	1,232	143,144
	10 20 30 40 50 60 MGYLKLIEIE NFKSYKGRQI IGPFHKFTAI IGPNGSGKSN LMDAISFVLA EKTSNLRVKT 70 80 90 100 110 120 LKDLIHGAPV GKPAANRAFV SMVYCEDNGE ECTFTRAIIG SSSEYRINSK VVGLSDYSEE 130 140 150 160 170 180 LEKLGILIKA RNFLVFQGAV ESIAMKNPKE RTALFEEISR SGELAQEYDR RKKEMVKAEE 190 200 210 220 230 240 DTQFSYHRKK NIAAERKEAK QEKEEAERYQ RLKDEVVRAH VQLQLFKLYH NEEEIEKLNR 250 260 270 280 290 300 ELSQRNREID KDRKKMDHVE EELKDKKKEL GRMMRDQQNV EKEIKEKDAE LNQKRPQYIK 310 320 330 340 350 360 AKENTAHKIK KLEVARKSLQ NAQKMYKKRK ADIEELDREQ GAVEMSRQEF EERMEEEAQS 370 380 390 400 410 420 QGQDLTLEEN QVKQYHRLKE EASKRAATLA QELEKFNRDQ KADQDRLDLE ERKKIETEAK 430 440 450 460 470 480 IKQKIREIEE NQKRIEKLED YIATSRQSLD EQRRMEEELT EEVELAKRRI DEINMELNQV 490 500 510 520 530 540 MEQLGDARID RQENSRQQRK AEIMESIKRL YPGSVYGRLI DLCQPTQKKY QIAVTKVLGK 550 560 570 580 590 600 NMDAIIVDSE KTGRDCIQYI KEQRGEPETF LPLDYLEVKP TDEKLRELRG AKLVIDVIRY 610 620 630 640 650 660 EPPHIKKALQ YACGNALVCE NVEDARRIAF GGPYRHKTVA LDGTLFQKSG VISGGASDLK 670 680 690 700 710 720 AKARRWDEKA VDKLKEKKEK LTEELKEQMK AKRKEAELRQ VQSQAHGLQM RLKYSQSDLE 730 740 750 760 770 780 QTKTRHLSLN MQEKSKLESE LANFGPRIND IKRIIQSRER DITQLRDRMN LVEDEVFFEF 790 800 810 820 830 840 CKEIGVRNIR EFEEEKVKRQ NEIAKKRLEF ETQKTRLAIQ LDYEKNQLKE DQEKVMMWEQ 850 860 870 880 890 900 TVKKDENEIE RLKKEEHRHM KIIDETMAQL QDLKNQHLTK KGEVNDKNRE MEEIRKKLGS 910 920 930 940 950 960 ANKELTQLQK EVTAIETKLE QKRSDRHNLL QACKMQDIKL PLKSGTMDDI SQGEGGSQVE 970 980 990 1000 1010 1020 DAISSPKASS SVHAKEALIE IDYSNLNEDL KDALSEDEIK GEMNTLQQRL NEQQSILQRI 1030 1040 1050 1060 1070 1080 SAPNMKAMEK LESVRDKFQE TSDEFEAARK RAKKAKQAFE QIKKERFDRF NACFESVATN 1090 1100 1110 1120 1130 1140 IDEIYKALSR NSSAQAFLGP ENPEEPYLDG INYNCVAPGK RFRPMDNLSG GEKTVAALAL 1150 1160 1170 1180 1190 1200 LFAIHSYKPA PFFVLDEIDA ALDNTNIGKV ANYIKDQSVQ NFQAIVISLK EEFYTKADSL 1210 1220 1230 IGVYPEQGDC VISKVLTFDL SQYPDANPNP ND

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000072610.
[2]	Ensembl Submitted (APR-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000072610.
[3]	Ensembl Submitted (FEB-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000072610.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR354431 Genomic DNA. No translation available.
IPI	IPI00506664.
RefSeq	NP_001155103.1. NM_001161631.1.
UniGene	Dr.120420.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000078148; ENSDARP00000072610; ENSDARG00000055754.
GeneID	559665.
KEGG	dre:559665.
Organism-specific databases
CTD	8243.
ZFIN	ZDB-GENE-090506-9. smc1a.
Phylogenomic databases
GeneTree	ENSGT00580000081569.
KO	K06636.
OMA	ERIRHAN.
Family and domain databases
InterPro	IPR003395. RecF/RecN/SMC. IPR024704. SMC. IPR010935. SMC_hinge. [Graphical view]
Pfam	PF06470. SMC_hinge. 1 hit. PF02463. SMC_N. 2 hits. [Graphical view]
PIRSF	PIRSF005719. SMC. 1 hit.
SMART	SM00968. SMC_hinge. 1 hit. [Graphical view]
SUPFAM	SSF75553. SMC_hinge. 1 hit.
ProtoNet	Search...
Other
NextBio	20883076.

Entry information

Entry name

E7F0X6_DANRE

Accession

Primary (citable) accession number: E7F0X6

Entry history

Integrated into UniProtKB/TrEMBL:	March 8, 2011
Last sequence update:	March 8, 2011
Last modified:	March 6, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)