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E7EXP8

- E7EXP8_DANRE

UniProt

E7EXP8 - E7EXP8_DANRE

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Protein
Submitted name: Uncharacterized protein
Gene
arhgef16
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. Rho guanyl-nucleotide exchange factor activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:arhgef16Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437: Chromosome 8

Organism-specific databases

ZFINiZDB-GENE-081104-446. arhgef16.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00550000074493.
OMAiANCAKEI.
TreeFamiTF316357.

Family and domain databases

Gene3Di1.20.900.10. 1 hit.
2.30.29.30. 1 hit.
InterProiIPR000219. DH-domain.
IPR001849. PH_domain.
IPR011993. PH_like_dom.
IPR001452. SH3_domain.
[Graphical view]
PfamiPF00169. PH. 1 hit.
PF00621. RhoGEF. 1 hit.
PF14604. SH3_9. 1 hit.
[Graphical view]
SMARTiSM00233. PH. 1 hit.
SM00325. RhoGEF. 1 hit.
SM00326. SH3. 1 hit.
[Graphical view]
SUPFAMiSSF48065. SSF48065. 1 hit.
SSF50044. SSF50044. 1 hit.
PROSITEiPS50010. DH_2. 1 hit.
PS50003. PH_DOMAIN. 1 hit.
PS50002. SH3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

E7EXP8-1 [UniParc]FASTAAdd to Basket

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MSHRKSDGST YDQSLLIPES RFNTVLQLDQ SSGKSASSIN LSRLDSPEDE    50
RRTVVLSTQS EAARKRGTQQ LIPKSLAVTS RPKNRHHTTV VTLPVPLQAS 100
EIGWEDYDSD AGDGVSLRRN RRNKSYRAAI TSLHLDGELQ PESLSPVSDE 150
KVVSPKQANK SGRKRTLGRI RNRKHAGSFK DEPRFYQEIK ERGLNVSSLS 200
TEEEELSPVG PPGEDQGIVV KNYRAAYITW SQLPQVKDLG ILDFITPEER 250
KRQEVIFEII TSEYSYQHSL SILVRHFKDS VDLRKTMTAT EHHHLFSNIS 300
VIQDVSKRFF EDLDKRHQAN PVIERISDIV ATYATKHFEP YIVYCSNETF 350
QQRTLQKLLS SNSAFRETLK QIETSEDCGG LPMLSFLILP MQRVTRLPLL 400
MDTICEKTTK ETAEYYKACW AFKAISKLVK SCNDGARRME RTEQMYTIQK 450
QMEFGKIKPF PLVSSSRWLK KSGELAVYTD DLSIFRKAFS FKSYYLFLFN 500
DVLIVTKKKS EESYVVLDYA TVEKVEVEEE MSDSKLNLKL MMNPNSDGRS 550
EQLVLVAENK LVRAQWVTAL RDVKQTSSID NDDLPQYEAT KAYLPKAPDE 600
LSLQQAEVVI VIQEVEGWCY GERMRDGERG WFPASCATQI TNRTAMENNI 650
QRMERLRKET NV 662
Length:662
Mass (Da):75,870
Last modified:March 8, 2011 - v1
Checksum:iED2192CFFEBBF818
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX000472 Genomic DNA. No translation available.
CR792439 Genomic DNA. No translation available.
CT573138 Genomic DNA. No translation available.
RefSeqiXP_005167338.1. XM_005167281.1.
UniGeneiDr.78159.

Genome annotation databases

EnsembliENSDART00000131137; ENSDARP00000111989; ENSDARG00000077114.
GeneIDi567180.
KEGGidre:567180.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BX000472 Genomic DNA. No translation available.
CR792439 Genomic DNA. No translation available.
CT573138 Genomic DNA. No translation available.
RefSeqi XP_005167338.1. XM_005167281.1.
UniGenei Dr.78159.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSDART00000131137 ; ENSDARP00000111989 ; ENSDARG00000077114 .
GeneIDi 567180.
KEGGi dre:567180.

Organism-specific databases

CTDi 27237.
ZFINi ZDB-GENE-081104-446. arhgef16.

Phylogenomic databases

GeneTreei ENSGT00550000074493.
OMAi ANCAKEI.
TreeFami TF316357.

Miscellaneous databases

PROi E7EXP8.

Family and domain databases

Gene3Di 1.20.900.10. 1 hit.
2.30.29.30. 1 hit.
InterProi IPR000219. DH-domain.
IPR001849. PH_domain.
IPR011993. PH_like_dom.
IPR001452. SH3_domain.
[Graphical view ]
Pfami PF00169. PH. 1 hit.
PF00621. RhoGEF. 1 hit.
PF14604. SH3_9. 1 hit.
[Graphical view ]
SMARTi SM00233. PH. 1 hit.
SM00325. RhoGEF. 1 hit.
SM00326. SH3. 1 hit.
[Graphical view ]
SUPFAMi SSF48065. SSF48065. 1 hit.
SSF50044. SSF50044. 1 hit.
PROSITEi PS50010. DH_2. 1 hit.
PS50003. PH_DOMAIN. 1 hit.
PS50002. SH3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Ensembl
    Submitted (APR-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.
  2. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.

Entry informationi

Entry nameiE7EXP8_DANRE
AccessioniPrimary (citable) accession number: E7EXP8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: September 3, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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